Strain Fitness in Variovorax sp. SCN45 around GFF2219

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2217 and GFF2218 are separated by 122 nucleotidesGFF2218 and GFF2219 are separated by 139 nucleotidesGFF2219 and GFF2220 are separated by 117 nucleotides GFF2217 - Transcriptional regulator, LysR family, at 278,785 to 279,747 GFF2217 GFF2218 - FIG00455441: hypothetical protein, at 279,870 to 280,391 GFF2218 GFF2219 - FIG00454641: hypothetical protein, at 280,531 to 281,538 GFF2219 GFF2220 - Aldehyde dehydrogenase (EC 1.2.1.3), at 281,656 to 283,134 GFF2220 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.595 kb on + strand, within GFF2217at 279.596 kb on - strand, within GFF2217at 279.795 kb on + strandat 279.841 kb on + strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.842 kb on - strandat 279.894 kb on + strandat 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.047 kb on + strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.048 kb on - strand, within GFF2218at 280.089 kb on + strand, within GFF2218at 280.089 kb on + strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.090 kb on - strand, within GFF2218at 280.358 kb on - strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.505 kb on + strandat 280.506 kb on - strandat 280.506 kb on - strandat 280.592 kb on - strandat 280.636 kb on + strand, within GFF2219at 280.637 kb on - strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.705 kb on + strand, within GFF2219at 280.706 kb on - strand, within GFF2219at 280.748 kb on - strand, within GFF2219at 280.792 kb on + strand, within GFF2219at 280.793 kb on - strand, within GFF2219at 280.810 kb on + strand, within GFF2219at 280.811 kb on - strand, within GFF2219at 280.811 kb on - strand, within GFF2219at 280.811 kb on - strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.242 kb on + strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.243 kb on - strand, within GFF2219at 281.417 kb on - strand, within GFF2219at 281.417 kb on - strand, within GFF2219at 281.491 kb on + strandat 281.491 kb on + strandat 281.491 kb on + strandat 281.491 kb on + strandat 281.492 kb on - strandat 281.492 kb on - strandat 282.067 kb on + strand, within GFF2220at 282.067 kb on + strand, within GFF2220at 282.068 kb on - strand, within GFF2220at 282.068 kb on - strand, within GFF2220at 282.301 kb on + strand, within GFF2220at 282.301 kb on + strand, within GFF2220at 282.301 kb on + strand, within GFF2220at 282.301 kb on + strand, within GFF2220

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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279,595 + GFF2217 0.84 -0.1
279,596 - GFF2217 0.84 -0.2
279,795 + -0.5
279,841 + +0.3
279,842 - -0.1
279,842 - +0.5
279,842 - -0.3
279,842 - -0.2
279,842 - -0.0
279,894 + +0.2
280,047 + GFF2218 0.34 -1.9
280,047 + GFF2218 0.34 -0.1
280,047 + GFF2218 0.34 -0.4
280,047 + GFF2218 0.34 -0.6
280,047 + GFF2218 0.34 -1.2
280,047 + GFF2218 0.34 +0.2
280,047 + GFF2218 0.34 -0.2
280,047 + GFF2218 0.34 +0.2
280,048 - GFF2218 0.34 +1.2
280,048 - GFF2218 0.34 -0.0
280,048 - GFF2218 0.34 +0.9
280,048 - GFF2218 0.34 +0.9
280,089 + GFF2218 0.42 +1.2
280,089 + GFF2218 0.42 -0.3
280,090 - GFF2218 0.42 +0.9
280,090 - GFF2218 0.42 -0.6
280,090 - GFF2218 0.42 -0.2
280,358 - -0.1
280,505 + +0.2
280,505 + -0.9
280,505 + -0.1
280,505 + -0.7
280,505 + -1.2
280,505 + -0.7
280,506 - -0.4
280,506 - -0.3
280,592 - +1.1
280,636 + GFF2219 0.10 -0.4
280,637 - GFF2219 0.11 +0.1
280,705 + GFF2219 0.17 +0.1
280,705 + GFF2219 0.17 -0.5
280,705 + GFF2219 0.17 -0.2
280,706 - GFF2219 0.17 -0.7
280,748 - GFF2219 0.22 +0.2
280,792 + GFF2219 0.26 -0.5
280,793 - GFF2219 0.26 -0.1
280,810 + GFF2219 0.28 +2.6
280,811 - GFF2219 0.28 -0.9
280,811 - GFF2219 0.28 -0.1
280,811 - GFF2219 0.28 -0.8
281,242 + GFF2219 0.71 -0.4
281,242 + GFF2219 0.71 -0.2
281,242 + GFF2219 0.71 -0.3
281,242 + GFF2219 0.71 +1.1
281,242 + GFF2219 0.71 +1.3
281,242 + GFF2219 0.71 -0.5
281,242 + GFF2219 0.71 +0.2
281,242 + GFF2219 0.71 +0.6
281,242 + GFF2219 0.71 -1.8
281,243 - GFF2219 0.71 -0.2
281,243 - GFF2219 0.71 +1.2
281,243 - GFF2219 0.71 -0.5
281,243 - GFF2219 0.71 -0.9
281,243 - GFF2219 0.71 -0.0
281,243 - GFF2219 0.71 +0.5
281,243 - GFF2219 0.71 +0.0
281,243 - GFF2219 0.71 +0.7
281,243 - GFF2219 0.71 +0.2
281,243 - GFF2219 0.71 +0.9
281,243 - GFF2219 0.71 +0.4
281,417 - GFF2219 0.88 -0.6
281,417 - GFF2219 0.88 +1.3
281,491 + -0.5
281,491 + -0.1
281,491 + +0.8
281,491 + -0.4
281,492 - +0.5
281,492 - -0.5
282,067 + GFF2220 0.28 -0.6
282,067 + GFF2220 0.28 -0.4
282,068 - GFF2220 0.28 -0.4
282,068 - GFF2220 0.28 -0.2
282,301 + GFF2220 0.44 +0.0
282,301 + GFF2220 0.44 +0.3
282,301 + GFF2220 0.44 -0.4
282,301 + GFF2220 0.44 +0.1

Or see this region's nucleotide sequence