Strain Fitness in Variovorax sp. SCN45 around GFF218

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF216 and GFF217 are separated by 86 nucleotidesGFF217 and GFF218 are separated by 120 nucleotidesGFF218 and GFF219 are separated by 122 nucleotides GFF216 - Transmembrane regulator protein PrtR, at 240,039 to 240,863 GFF216 GFF217 - Orf21; putative lipoprotein, at 240,950 to 241,333 GFF217 GFF218 - hypothetical protein, at 241,454 to 242,956 GFF218 GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917 GFF219 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 240.459 kb on + strand, within GFF216at 240.459 kb on + strand, within GFF216at 240.459 kb on + strand, within GFF216at 240.460 kb on - strand, within GFF216at 240.460 kb on - strand, within GFF216at 240.579 kb on + strand, within GFF216at 240.579 kb on + strand, within GFF216at 240.579 kb on + strand, within GFF216at 240.579 kb on + strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.580 kb on - strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.672 kb on + strand, within GFF216at 240.673 kb on - strand, within GFF216at 240.673 kb on - strand, within GFF216at 240.673 kb on - strand, within GFF216at 240.673 kb on - strand, within GFF216at 240.765 kb on + strand, within GFF216at 240.765 kb on + strand, within GFF216at 240.765 kb on + strand, within GFF216at 240.765 kb on + strand, within GFF216at 240.765 kb on + strand, within GFF216at 240.766 kb on - strand, within GFF216at 240.766 kb on - strand, within GFF216at 240.846 kb on + strandat 240.861 kb on + strandat 240.861 kb on + strandat 240.872 kb on + strandat 240.873 kb on - strandat 240.873 kb on - strandat 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.079 kb on + strand, within GFF217at 241.080 kb on - strand, within GFF217at 241.080 kb on - strand, within GFF217at 241.080 kb on - strand, within GFF217at 241.191 kb on - strand, within GFF217at 241.191 kb on - strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.232 kb on + strand, within GFF217at 241.233 kb on - strand, within GFF217at 241.233 kb on - strand, within GFF217at 241.233 kb on - strand, within GFF217at 241.233 kb on - strand, within GFF217at 241.233 kb on - strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.250 kb on + strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.251 kb on - strand, within GFF217at 241.253 kb on + strand, within GFF217at 241.253 kb on + strand, within GFF217at 241.253 kb on + strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.254 kb on - strand, within GFF217at 241.772 kb on + strand, within GFF218at 241.772 kb on + strand, within GFF218at 241.773 kb on - strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.114 kb on + strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.115 kb on - strand, within GFF218at 242.708 kb on + strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.709 kb on - strand, within GFF218at 242.954 kb on + strandat 242.955 kb on - strandat 242.955 kb on - strandat 243.204 kb on - strandat 243.286 kb on - strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.347 kb on + strand, within GFF219at 243.348 kb on - strand, within GFF219at 243.348 kb on - strand, within GFF219at 243.407 kb on + strand, within GFF219at 243.408 kb on - strand, within GFF219at 243.408 kb on - strand, within GFF219at 243.485 kb on + strand, within GFF219at 243.485 kb on + strand, within GFF219at 243.578 kb on + strand, within GFF219at 243.579 kb on - strand, within GFF219at 243.768 kb on - strand, within GFF219

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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240,459 + GFF216 0.51 -0.7
240,459 + GFF216 0.51 +0.2
240,459 + GFF216 0.51 +0.3
240,460 - GFF216 0.51 -0.4
240,460 - GFF216 0.51 -0.0
240,579 + GFF216 0.65 +0.6
240,579 + GFF216 0.65 -0.7
240,579 + GFF216 0.65 -1.7
240,579 + GFF216 0.65 -0.6
240,580 - GFF216 0.66 +0.2
240,580 - GFF216 0.66 -0.7
240,580 - GFF216 0.66 -1.0
240,580 - GFF216 0.66 -0.6
240,580 - GFF216 0.66 +0.8
240,580 - GFF216 0.66 -0.3
240,580 - GFF216 0.66 +1.3
240,672 + GFF216 0.77 -0.3
240,672 + GFF216 0.77 -0.8
240,672 + GFF216 0.77 +1.9
240,672 + GFF216 0.77 +0.7
240,672 + GFF216 0.77 -0.2
240,672 + GFF216 0.77 -0.4
240,672 + GFF216 0.77 +0.4
240,673 - GFF216 0.77 -0.5
240,673 - GFF216 0.77 -0.4
240,673 - GFF216 0.77 +0.2
240,673 - GFF216 0.77 +0.0
240,765 + GFF216 0.88 +0.7
240,765 + GFF216 0.88 -0.5
240,765 + GFF216 0.88 +0.2
240,765 + GFF216 0.88 -0.1
240,765 + GFF216 0.88 -0.1
240,766 - GFF216 0.88 +0.9
240,766 - GFF216 0.88 +0.5
240,846 + +2.0
240,861 + -0.3
240,861 + -0.2
240,872 + -0.5
240,873 - -0.1
240,873 - -0.7
241,079 + GFF217 0.34 -0.0
241,079 + GFF217 0.34 +1.3
241,079 + GFF217 0.34 +0.1
241,079 + GFF217 0.34 -0.3
241,079 + GFF217 0.34 +0.0
241,079 + GFF217 0.34 -0.0
241,079 + GFF217 0.34 +0.5
241,079 + GFF217 0.34 +0.1
241,080 - GFF217 0.34 -0.6
241,080 - GFF217 0.34 +0.1
241,080 - GFF217 0.34 +0.5
241,191 - GFF217 0.63 +0.6
241,191 - GFF217 0.63 +0.1
241,232 + GFF217 0.73 +0.2
241,232 + GFF217 0.73 +0.3
241,232 + GFF217 0.73 -0.7
241,232 + GFF217 0.73 -0.7
241,232 + GFF217 0.73 -0.1
241,232 + GFF217 0.73 -0.1
241,232 + GFF217 0.73 -0.4
241,232 + GFF217 0.73 +0.1
241,232 + GFF217 0.73 -0.3
241,232 + GFF217 0.73 -0.3
241,233 - GFF217 0.74 +0.7
241,233 - GFF217 0.74 -0.8
241,233 - GFF217 0.74 +0.7
241,233 - GFF217 0.74 +1.4
241,233 - GFF217 0.74 -0.9
241,250 + GFF217 0.78 -0.6
241,250 + GFF217 0.78 -0.5
241,250 + GFF217 0.78 -1.9
241,250 + GFF217 0.78 -0.5
241,250 + GFF217 0.78 -0.4
241,250 + GFF217 0.78 +0.3
241,251 - GFF217 0.78 -0.5
241,251 - GFF217 0.78 -0.1
241,251 - GFF217 0.78 -0.5
241,251 - GFF217 0.78 +0.9
241,251 - GFF217 0.78 -0.8
241,251 - GFF217 0.78 -0.4
241,251 - GFF217 0.78 -1.3
241,253 + GFF217 0.79 -0.3
241,253 + GFF217 0.79 +1.9
241,253 + GFF217 0.79 +0.4
241,254 - GFF217 0.79 +0.9
241,254 - GFF217 0.79 +0.2
241,254 - GFF217 0.79 -0.6
241,254 - GFF217 0.79 -0.2
241,254 - GFF217 0.79 +0.6
241,254 - GFF217 0.79 +0.2
241,772 + GFF218 0.21 -1.5
241,772 + GFF218 0.21 +0.6
241,773 - GFF218 0.21 +0.1
242,114 + GFF218 0.44 -0.3
242,114 + GFF218 0.44 -0.4
242,114 + GFF218 0.44 -0.9
242,114 + GFF218 0.44 +0.3
242,114 + GFF218 0.44 -0.4
242,114 + GFF218 0.44 -0.9
242,114 + GFF218 0.44 -0.4
242,115 - GFF218 0.44 -0.3
242,115 - GFF218 0.44 -1.8
242,115 - GFF218 0.44 +0.1
242,115 - GFF218 0.44 +1.5
242,115 - GFF218 0.44 -0.4
242,708 + GFF218 0.83 -0.9
242,709 - GFF218 0.83 -1.0
242,709 - GFF218 0.83 -0.4
242,709 - GFF218 0.83 -1.5
242,954 + -0.4
242,955 - -0.5
242,955 - -0.5
243,204 - -0.3
243,286 - GFF219 0.11 -0.7
243,347 + GFF219 0.15 -0.3
243,347 + GFF219 0.15 -0.8
243,347 + GFF219 0.15 -0.3
243,348 - GFF219 0.15 +1.6
243,348 - GFF219 0.15 +0.6
243,407 + GFF219 0.18 -1.5
243,408 - GFF219 0.18 -1.0
243,408 - GFF219 0.18 -2.0
243,485 + GFF219 0.22 -1.0
243,485 + GFF219 0.22 -0.7
243,578 + GFF219 0.27 -1.3
243,579 - GFF219 0.27 -1.7
243,768 - GFF219 0.37 -3.0

Or see this region's nucleotide sequence