Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2138 and GFF2139 overlap by 4 nucleotides GFF2139 and GFF2140 are separated by 52 nucleotides
GFF2138 - Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1), at 186,720 to 187,709
GFF2138
GFF2139 - Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1), at 187,706 to 189,334
GFF2139
GFF2140 - Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1), at 189,387 to 190,340
GFF2140
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.270 kb on + strand, within GFF2138 at 187.270 kb on + strand, within GFF2138 at 187.271 kb on - strand, within GFF2138 at 187.582 kb on + strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.583 kb on - strand, within GFF2138 at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.642 kb on + strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.643 kb on - strand at 187.694 kb on + strand at 187.998 kb on + strand, within GFF2139 at 188.090 kb on + strand, within GFF2139 at 188.736 kb on + strand, within GFF2139 at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.388 kb on + strand at 189.580 kb on + strand, within GFF2140 at 189.713 kb on + strand, within GFF2140 at 189.713 kb on + strand, within GFF2140 at 189.714 kb on - strand, within GFF2140 at 189.791 kb on - strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.153 kb on + strand, within GFF2140 at 190.154 kb on - strand, within GFF2140 at 190.154 kb on - strand, within GFF2140 at 190.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 187,270 + GFF2138 0.56 +0.8 187,270 + GFF2138 0.56 +0.4 187,271 - GFF2138 0.56 -0.1 187,582 + GFF2138 0.87 -0.0 187,583 - GFF2138 0.87 -0.2 187,583 - GFF2138 0.87 -0.1 187,642 + +0.5 187,642 + +0.1 187,642 + +0.0 187,642 + +0.6 187,642 + +0.6 187,642 + -0.5 187,643 - -0.1 187,643 - +0.7 187,643 - -1.0 187,643 - +1.2 187,643 - -0.4 187,643 - -0.7 187,694 + -1.3 187,998 + GFF2139 0.18 -0.3 188,090 + GFF2139 0.24 -2.0 188,736 + GFF2139 0.63 -0.5 189,279 + -1.5 189,279 + -0.2 189,279 + -0.3 189,279 + +0.2 189,279 + +0.1 189,388 + -1.9 189,580 + GFF2140 0.20 -1.2 189,713 + GFF2140 0.34 -1.2 189,713 + GFF2140 0.34 -1.9 189,714 - GFF2140 0.34 -0.5 189,791 - GFF2140 0.42 +1.0 190,153 + GFF2140 0.80 -1.4 190,153 + GFF2140 0.80 +0.0 190,153 + GFF2140 0.80 -0.1 190,154 - GFF2140 0.80 -0.0 190,154 - GFF2140 0.80 -0.5 190,322 + -0.6
Or see this region's nucleotide sequence