Strain Fitness in Variovorax sp. SCN45 around GFF2010

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2008 and GFF2009 are separated by 21 nucleotidesGFF2009 and GFF2010 are separated by 16 nucleotidesGFF2010 and GFF2011 are separated by 1 nucleotidesGFF2011 and GFF2012 are separated by 15 nucleotides GFF2008 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 52,624 to 54,252 GFF2008 GFF2009 - Dienelactone hydrolase and related enzymes, at 54,274 to 55,140 GFF2009 GFF2010 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 55,157 to 55,963 GFF2010 GFF2011 - hypothetical protein, at 55,965 to 56,468 GFF2011 GFF2012 - Putative transmembrane protein, at 56,484 to 57,158 GFF2012 Position (kb) 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.250 kb on + strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.251 kb on - strandat 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.427 kb on + strand, within GFF2009at 54.428 kb on - strand, within GFF2009at 54.521 kb on - strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.619 kb on + strand, within GFF2009at 54.620 kb on - strand, within GFF2009at 54.643 kb on + strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.644 kb on - strand, within GFF2009at 54.694 kb on + strand, within GFF2009at 54.713 kb on - strand, within GFF2009at 54.893 kb on - strand, within GFF2009at 54.928 kb on + strand, within GFF2009at 54.928 kb on + strand, within GFF2009at 54.929 kb on - strand, within GFF2009at 54.985 kb on + strand, within GFF2009at 54.985 kb on + strand, within GFF2009at 55.172 kb on + strandat 55.172 kb on + strandat 55.172 kb on + strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.173 kb on - strandat 55.391 kb on + strand, within GFF2010at 55.392 kb on - strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.496 kb on + strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.497 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.560 kb on - strand, within GFF2010at 55.610 kb on + strand, within GFF2010at 55.611 kb on - strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.649 kb on + strand, within GFF2010at 55.650 kb on - strand, within GFF2010at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.559 kb on + strand, within GFF2012at 56.559 kb on + strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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54,250 + -0.4
54,250 + -0.3
54,250 + -0.8
54,250 + -0.9
54,250 + -0.2
54,250 + -0.2
54,250 + -1.8
54,250 + -0.2
54,251 - -0.2
54,251 - +0.7
54,251 - -1.2
54,251 - +1.0
54,251 - +0.1
54,251 - -0.2
54,251 - +0.0
54,251 - -0.6
54,427 + GFF2009 0.18 -0.3
54,427 + GFF2009 0.18 -0.1
54,427 + GFF2009 0.18 -0.3
54,427 + GFF2009 0.18 -0.6
54,427 + GFF2009 0.18 -0.5
54,428 - GFF2009 0.18 -0.9
54,521 - GFF2009 0.28 +1.2
54,619 + GFF2009 0.40 +0.4
54,619 + GFF2009 0.40 -0.8
54,619 + GFF2009 0.40 -0.9
54,619 + GFF2009 0.40 -0.3
54,619 + GFF2009 0.40 -0.1
54,619 + GFF2009 0.40 -1.3
54,619 + GFF2009 0.40 -0.9
54,619 + GFF2009 0.40 -0.7
54,620 - GFF2009 0.40 -0.5
54,643 + GFF2009 0.43 -0.2
54,644 - GFF2009 0.43 -1.3
54,644 - GFF2009 0.43 +0.1
54,644 - GFF2009 0.43 +0.2
54,694 + GFF2009 0.48 +1.3
54,713 - GFF2009 0.51 -0.9
54,893 - GFF2009 0.71 -0.8
54,928 + GFF2009 0.75 -0.3
54,928 + GFF2009 0.75 +0.9
54,929 - GFF2009 0.76 +1.0
54,985 + GFF2009 0.82 +1.1
54,985 + GFF2009 0.82 -0.4
55,172 + -1.3
55,172 + +0.2
55,172 + +1.1
55,173 - -0.3
55,173 - -0.8
55,173 - -0.4
55,391 + GFF2010 0.29 -0.5
55,392 - GFF2010 0.29 -1.5
55,496 + GFF2010 0.42 +0.7
55,496 + GFF2010 0.42 +0.7
55,496 + GFF2010 0.42 -1.3
55,496 + GFF2010 0.42 -0.9
55,496 + GFF2010 0.42 -0.0
55,497 - GFF2010 0.42 -0.2
55,497 - GFF2010 0.42 -3.0
55,497 - GFF2010 0.42 -0.6
55,497 - GFF2010 0.42 -0.3
55,497 - GFF2010 0.42 +0.1
55,497 - GFF2010 0.42 -1.5
55,497 - GFF2010 0.42 -0.7
55,497 - GFF2010 0.42 -1.0
55,497 - GFF2010 0.42 -0.5
55,497 - GFF2010 0.42 +0.7
55,560 - GFF2010 0.50 -0.3
55,560 - GFF2010 0.50 -0.8
55,560 - GFF2010 0.50 -0.6
55,560 - GFF2010 0.50 -0.8
55,610 + GFF2010 0.56 -0.7
55,611 - GFF2010 0.56 +0.5
55,649 + GFF2010 0.61 -0.7
55,649 + GFF2010 0.61 +0.2
55,649 + GFF2010 0.61 -0.5
55,649 + GFF2010 0.61 -0.8
55,650 - GFF2010 0.61 +0.4
56,307 + GFF2011 0.68 -0.3
56,307 + GFF2011 0.68 +0.1
56,307 + GFF2011 0.68 +1.1
56,307 + GFF2011 0.68 -0.2
56,307 + GFF2011 0.68 -0.1
56,308 - GFF2011 0.68 -0.2
56,308 - GFF2011 0.68 +0.1
56,308 - GFF2011 0.68 -0.5
56,308 - GFF2011 0.68 -0.9
56,308 - GFF2011 0.68 -1.2
56,308 - GFF2011 0.68 -0.0
56,559 + GFF2012 0.11 -0.3
56,559 + GFF2012 0.11 -0.2
56,560 - GFF2012 0.11 +0.7
56,560 - GFF2012 0.11 -0.5
56,560 - GFF2012 0.11 -1.2
56,560 - GFF2012 0.11 -0.1
56,593 - GFF2012 0.16 -0.0
56,593 - GFF2012 0.16 -0.8

Or see this region's nucleotide sequence