Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1977 and GFF1978 are separated by 87 nucleotides GFF1978 and GFF1979 are separated by 182 nucleotides
GFF1977 - L-asparaginase (EC 3.5.1.1), at 19,324 to 20,394
GFF1977
GFF1978 - putative membrane-associated phospholipid phosphatase, PAP2 superfamily, at 20,482 to 21,294
GFF1978
GFF1979 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 21,477 to 22,385
GFF1979
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 19.483 kb on + strand, within GFF1977 at 19.483 kb on + strand, within GFF1977 at 19.483 kb on + strand, within GFF1977 at 19.483 kb on + strand, within GFF1977 at 19.484 kb on - strand, within GFF1977 at 19.484 kb on - strand, within GFF1977 at 19.484 kb on - strand, within GFF1977 at 19.484 kb on - strand, within GFF1977 at 19.484 kb on - strand, within GFF1977 at 19.705 kb on + strand, within GFF1977 at 19.804 kb on + strand, within GFF1977 at 19.805 kb on - strand, within GFF1977 at 19.805 kb on - strand, within GFF1977 at 19.975 kb on + strand, within GFF1977 at 19.976 kb on - strand, within GFF1977 at 19.976 kb on - strand, within GFF1977 at 19.976 kb on - strand, within GFF1977 at 20.071 kb on + strand, within GFF1977 at 20.072 kb on - strand, within GFF1977 at 20.072 kb on - strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.278 kb on + strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.279 kb on - strand, within GFF1977 at 20.376 kb on + strand at 20.376 kb on + strand at 20.376 kb on + strand at 20.377 kb on - strand at 20.377 kb on - strand at 20.377 kb on - strand at 20.377 kb on - strand at 20.377 kb on - strand at 20.390 kb on - strand at 20.390 kb on - strand at 20.390 kb on - strand at 20.390 kb on - strand at 20.510 kb on + strand at 20.583 kb on - strand, within GFF1978 at 20.690 kb on + strand, within GFF1978 at 20.690 kb on + strand, within GFF1978 at 20.691 kb on - strand, within GFF1978 at 20.691 kb on - strand, within GFF1978 at 20.705 kb on + strand, within GFF1978 at 20.705 kb on + strand, within GFF1978 at 20.706 kb on - strand, within GFF1978 at 20.706 kb on - strand, within GFF1978 at 20.706 kb on - strand, within GFF1978 at 20.747 kb on + strand, within GFF1978 at 20.748 kb on - strand, within GFF1978 at 21.217 kb on + strand at 21.217 kb on + strand at 21.217 kb on + strand at 21.378 kb on + strand at 21.410 kb on + strand at 21.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,483 + GFF1977 0.15 +0.7 19,483 + GFF1977 0.15 -0.2 19,483 + GFF1977 0.15 -1.0 19,483 + GFF1977 0.15 -0.9 19,484 - GFF1977 0.15 -0.5 19,484 - GFF1977 0.15 +1.2 19,484 - GFF1977 0.15 -0.3 19,484 - GFF1977 0.15 -1.2 19,484 - GFF1977 0.15 +0.1 19,705 + GFF1977 0.36 -0.6 19,804 + GFF1977 0.45 -1.7 19,805 - GFF1977 0.45 -0.0 19,805 - GFF1977 0.45 +0.3 19,975 + GFF1977 0.61 -1.0 19,976 - GFF1977 0.61 +0.0 19,976 - GFF1977 0.61 +0.1 19,976 - GFF1977 0.61 -1.0 20,071 + GFF1977 0.70 -0.8 20,072 - GFF1977 0.70 -0.9 20,072 - GFF1977 0.70 +0.5 20,278 + GFF1977 0.89 -1.7 20,278 + GFF1977 0.89 -0.3 20,278 + GFF1977 0.89 +0.1 20,278 + GFF1977 0.89 -0.0 20,278 + GFF1977 0.89 +0.4 20,278 + GFF1977 0.89 +0.1 20,278 + GFF1977 0.89 -1.1 20,278 + GFF1977 0.89 -0.7 20,278 + GFF1977 0.89 -0.3 20,278 + GFF1977 0.89 +0.7 20,279 - GFF1977 0.89 -0.3 20,279 - GFF1977 0.89 +0.1 20,279 - GFF1977 0.89 -0.1 20,279 - GFF1977 0.89 +0.7 20,279 - GFF1977 0.89 -0.4 20,279 - GFF1977 0.89 -0.5 20,279 - GFF1977 0.89 -0.5 20,279 - GFF1977 0.89 -0.7 20,279 - GFF1977 0.89 -0.1 20,279 - GFF1977 0.89 +0.7 20,279 - GFF1977 0.89 -0.6 20,279 - GFF1977 0.89 -0.1 20,376 + -1.3 20,376 + +1.7 20,376 + +0.0 20,377 - +0.1 20,377 - -0.6 20,377 - -0.5 20,377 - -0.0 20,377 - -0.2 20,390 - +0.1 20,390 - -0.4 20,390 - -0.3 20,390 - +0.2 20,510 + -1.1 20,583 - GFF1978 0.12 -0.8 20,690 + GFF1978 0.26 +0.2 20,690 + GFF1978 0.26 -0.6 20,691 - GFF1978 0.26 -0.8 20,691 - GFF1978 0.26 -0.5 20,705 + GFF1978 0.27 -0.5 20,705 + GFF1978 0.27 -0.3 20,706 - GFF1978 0.28 -1.3 20,706 - GFF1978 0.28 -0.5 20,706 - GFF1978 0.28 -0.8 20,747 + GFF1978 0.33 +0.7 20,748 - GFF1978 0.33 +0.3 21,217 + -0.1 21,217 + -0.4 21,217 + -0.3 21,378 + -0.5 21,410 + -0.3 21,411 - -0.8
Or see this region's nucleotide sequence