Strain Fitness in Variovorax sp. SCN45 around GFF1967

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1966 and GFF1967 are separated by 3 nucleotidesGFF1967 and GFF1968 are separated by 8 nucleotidesGFF1968 and GFF1969 overlap by 4 nucleotides GFF1966 - Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE, at 8,226 to 9,800 GFF1966 GFF1967 - FAD linked oxidase-like, at 9,804 to 11,180 GFF1967 GFF1968 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 11,189 to 11,995 GFF1968 GFF1969 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 11,992 to 12,828 GFF1969 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 9.132 kb on + strand, within GFF1966at 9.133 kb on - strand, within GFF1966at 9.133 kb on - strand, within GFF1966at 9.133 kb on - strand, within GFF1966at 9.133 kb on - strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.189 kb on + strand, within GFF1966at 9.190 kb on - strand, within GFF1966at 9.190 kb on - strand, within GFF1966at 9.190 kb on - strand, within GFF1966at 9.190 kb on - strand, within GFF1966at 9.190 kb on - strand, within GFF1966at 9.234 kb on + strand, within GFF1966at 9.234 kb on + strand, within GFF1966at 9.234 kb on + strand, within GFF1966at 9.234 kb on + strand, within GFF1966at 9.234 kb on + strand, within GFF1966at 9.241 kb on - strand, within GFF1966at 9.241 kb on - strand, within GFF1966at 9.400 kb on - strand, within GFF1966at 9.693 kb on + strandat 9.694 kb on - strandat 9.694 kb on - strandat 10.171 kb on + strand, within GFF1967at 10.171 kb on + strand, within GFF1967at 10.171 kb on + strand, within GFF1967at 10.171 kb on + strand, within GFF1967at 10.171 kb on + strand, within GFF1967at 10.172 kb on - strand, within GFF1967at 10.172 kb on - strand, within GFF1967at 10.690 kb on + strand, within GFF1967at 10.691 kb on - strand, within GFF1967at 10.691 kb on - strand, within GFF1967at 10.753 kb on + strand, within GFF1967at 10.873 kb on + strand, within GFF1967at 10.873 kb on + strand, within GFF1967at 10.873 kb on + strand, within GFF1967at 10.873 kb on + strand, within GFF1967at 10.874 kb on - strand, within GFF1967at 10.874 kb on - strand, within GFF1967at 10.924 kb on + strand, within GFF1967at 10.924 kb on + strand, within GFF1967at 10.924 kb on + strand, within GFF1967at 10.924 kb on + strand, within GFF1967at 10.925 kb on - strand, within GFF1967at 10.925 kb on - strand, within GFF1967at 10.925 kb on - strand, within GFF1967at 11.346 kb on + strand, within GFF1968at 11.448 kb on + strand, within GFF1968at 11.448 kb on + strand, within GFF1968at 11.448 kb on + strand, within GFF1968at 11.448 kb on + strand, within GFF1968at 11.448 kb on + strand, within GFF1968at 11.449 kb on - strand, within GFF1968at 11.517 kb on + strand, within GFF1968at 11.517 kb on + strand, within GFF1968at 11.518 kb on - strand, within GFF1968at 11.518 kb on - strand, within GFF1968at 11.853 kb on + strand, within GFF1968at 11.853 kb on + strand, within GFF1968at 11.853 kb on + strand, within GFF1968at 11.853 kb on + strand, within GFF1968at 11.871 kb on + strand, within GFF1968at 11.871 kb on + strand, within GFF1968at 11.944 kb on - strandat 12.102 kb on - strand, within GFF1969at 12.130 kb on + strand, within GFF1969

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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9,132 + GFF1966 0.58 -2.3
9,133 - GFF1966 0.58 -0.7
9,133 - GFF1966 0.58 -2.4
9,133 - GFF1966 0.58 -1.3
9,133 - GFF1966 0.58 -1.9
9,189 + GFF1966 0.61 -0.9
9,189 + GFF1966 0.61 +0.4
9,189 + GFF1966 0.61 -0.1
9,189 + GFF1966 0.61 +0.3
9,189 + GFF1966 0.61 -0.4
9,189 + GFF1966 0.61 -1.2
9,190 - GFF1966 0.61 -1.0
9,190 - GFF1966 0.61 +0.0
9,190 - GFF1966 0.61 +0.1
9,190 - GFF1966 0.61 +0.8
9,190 - GFF1966 0.61 -0.9
9,234 + GFF1966 0.64 -0.7
9,234 + GFF1966 0.64 -2.2
9,234 + GFF1966 0.64 -1.1
9,234 + GFF1966 0.64 -1.2
9,234 + GFF1966 0.64 -0.3
9,241 - GFF1966 0.64 -0.8
9,241 - GFF1966 0.64 -1.5
9,400 - GFF1966 0.75 -0.2
9,693 + -0.2
9,694 - -1.0
9,694 - -0.4
10,171 + GFF1967 0.27 -1.1
10,171 + GFF1967 0.27 -0.2
10,171 + GFF1967 0.27 -0.6
10,171 + GFF1967 0.27 -1.3
10,171 + GFF1967 0.27 -0.5
10,172 - GFF1967 0.27 +0.3
10,172 - GFF1967 0.27 +1.1
10,690 + GFF1967 0.64 -0.4
10,691 - GFF1967 0.64 +0.2
10,691 - GFF1967 0.64 -0.8
10,753 + GFF1967 0.69 -0.4
10,873 + GFF1967 0.78 +0.1
10,873 + GFF1967 0.78 -1.6
10,873 + GFF1967 0.78 +0.8
10,873 + GFF1967 0.78 -0.3
10,874 - GFF1967 0.78 -1.1
10,874 - GFF1967 0.78 -0.2
10,924 + GFF1967 0.81 +0.2
10,924 + GFF1967 0.81 -0.0
10,924 + GFF1967 0.81 -0.5
10,924 + GFF1967 0.81 -1.5
10,925 - GFF1967 0.81 -0.4
10,925 - GFF1967 0.81 -1.3
10,925 - GFF1967 0.81 -0.3
11,346 + GFF1968 0.19 +2.2
11,448 + GFF1968 0.32 +1.5
11,448 + GFF1968 0.32 -1.3
11,448 + GFF1968 0.32 -0.3
11,448 + GFF1968 0.32 +0.9
11,448 + GFF1968 0.32 -0.7
11,449 - GFF1968 0.32 +0.4
11,517 + GFF1968 0.41 -0.2
11,517 + GFF1968 0.41 -0.3
11,518 - GFF1968 0.41 -0.9
11,518 - GFF1968 0.41 -0.3
11,853 + GFF1968 0.82 -1.3
11,853 + GFF1968 0.82 -0.6
11,853 + GFF1968 0.82 +0.1
11,853 + GFF1968 0.82 +0.3
11,871 + GFF1968 0.85 -0.1
11,871 + GFF1968 0.85 -0.7
11,944 - +0.2
12,102 - GFF1969 0.13 +0.3
12,130 + GFF1969 0.16 +0.4

Or see this region's nucleotide sequence