Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1897 and GFF1898 are separated by 122 nucleotides GFF1898 and GFF1899 overlap by 6 nucleotides
GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343
GFF1897
GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119
GFF1898
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.533 kb on - strand, within GFF1897 at 572.599 kb on - strand, within GFF1897 at 572.658 kb on + strand, within GFF1897 at 572.659 kb on - strand, within GFF1897 at 572.860 kb on - strand, within GFF1897 at 572.899 kb on - strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 573.030 kb on + strand, within GFF1897 at 573.031 kb on - strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.126 kb on + strand at 573.126 kb on + strand at 573.126 kb on + strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.998 kb on - strand, within GFF1898 at 574.223 kb on + strand at 574.574 kb on + strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.605 kb on - strand, within GFF1899 at 574.707 kb on - strand, within GFF1899 at 574.718 kb on + strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 572,533 - GFF1897 0.63 -0.7 572,599 - GFF1897 0.66 +0.2 572,658 + GFF1897 0.68 -0.0 572,659 - GFF1897 0.69 -1.0 572,860 - GFF1897 0.78 -0.6 572,899 - GFF1897 0.80 +2.3 572,988 + GFF1897 0.84 -0.4 572,988 + GFF1897 0.84 -0.7 572,988 + GFF1897 0.84 -0.5 573,030 + GFF1897 0.86 -0.3 573,031 - GFF1897 0.86 -0.9 573,120 + GFF1897 0.90 -0.3 573,120 + GFF1897 0.90 -0.0 573,121 - GFF1897 0.90 +0.7 573,121 - GFF1897 0.90 +0.1 573,121 - GFF1897 0.90 +1.7 573,126 + +1.0 573,126 + -0.4 573,126 + +0.3 573,127 - +1.0 573,127 - +1.1 573,127 - -0.4 573,127 - +0.3 573,127 - -0.7 573,127 - -0.0 573,823 + GFF1898 0.55 +0.2 573,823 + GFF1898 0.55 +0.7 573,823 + GFF1898 0.55 +0.3 573,991 + GFF1898 0.80 +0.6 573,991 + GFF1898 0.80 -0.8 573,991 + GFF1898 0.80 +0.3 573,991 + GFF1898 0.80 +0.3 573,992 - GFF1898 0.80 +0.0 573,992 - GFF1898 0.80 +0.1 573,998 - GFF1898 0.81 -0.3 574,223 + -0.8 574,574 + GFF1899 0.13 -0.4 574,593 - GFF1899 0.14 +0.7 574,593 - GFF1899 0.14 -0.7 574,593 - GFF1899 0.14 -0.3 574,605 - GFF1899 0.14 -1.0 574,707 - GFF1899 0.17 -0.2 574,718 + GFF1899 0.17 -0.2 574,719 - GFF1899 0.17 +0.8 574,719 - GFF1899 0.17 +0.3 574,734 - GFF1899 0.17 +0.2 574,734 - GFF1899 0.17 -0.3
Or see this region's nucleotide sequence