Strain Fitness in Variovorax sp. SCN45 around GFF1838

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1837 and GFF1838 are separated by 51 nucleotidesGFF1838 and GFF1839 are separated by 22 nucleotidesGFF1839 and GFF1840 are separated by 174 nucleotides GFF1837 - Transcriptional regulator, LysR family, at 504,693 to 505,607 GFF1837 GFF1838 - Manganese transport protein MntH, at 505,659 to 506,912 GFF1838 GFF1839 - Integral membrane protein, at 506,935 to 507,714 GFF1839 GFF1840 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 507,889 to 509,535 GFF1840 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1at 504.672 kb on - strandat 505.209 kb on + strand, within GFF1837at 505.209 kb on + strand, within GFF1837at 505.210 kb on - strand, within GFF1837at 505.210 kb on - strand, within GFF1837at 505.210 kb on - strand, within GFF1837at 505.210 kb on - strand, within GFF1837at 505.296 kb on + strand, within GFF1837at 505.296 kb on + strand, within GFF1837at 505.297 kb on - strand, within GFF1837at 505.297 kb on - strand, within GFF1837at 505.749 kb on + strandat 505.749 kb on + strandat 505.749 kb on + strandat 505.750 kb on - strandat 505.750 kb on - strandat 505.750 kb on - strandat 506.121 kb on + strand, within GFF1838at 506.208 kb on + strand, within GFF1838at 506.208 kb on + strand, within GFF1838at 506.254 kb on - strand, within GFF1838at 506.433 kb on + strand, within GFF1838at 506.433 kb on + strand, within GFF1838at 506.434 kb on - strand, within GFF1838at 506.434 kb on - strand, within GFF1838at 506.583 kb on + strand, within GFF1838at 506.584 kb on - strand, within GFF1838at 506.584 kb on - strand, within GFF1838at 506.584 kb on - strand, within GFF1838at 506.652 kb on + strand, within GFF1838at 506.652 kb on + strand, within GFF1838at 506.653 kb on - strand, within GFF1838at 506.728 kb on - strand, within GFF1838at 506.728 kb on - strand, within GFF1838at 506.921 kb on + strandat 506.922 kb on - strandat 506.922 kb on - strandat 506.922 kb on - strandat 506.922 kb on - strandat 507.001 kb on + strandat 507.130 kb on + strand, within GFF1839at 507.130 kb on + strand, within GFF1839at 507.130 kb on + strand, within GFF1839at 507.130 kb on + strand, within GFF1839at 507.131 kb on - strand, within GFF1839at 507.131 kb on - strand, within GFF1839at 507.131 kb on - strand, within GFF1839at 507.131 kb on - strand, within GFF1839at 507.131 kb on - strand, within GFF1839at 507.427 kb on + strand, within GFF1839at 507.427 kb on + strand, within GFF1839at 507.427 kb on + strand, within GFF1839at 507.427 kb on + strand, within GFF1839at 507.428 kb on - strand, within GFF1839at 507.428 kb on - strand, within GFF1839at 507.539 kb on - strand, within GFF1839at 507.578 kb on - strand, within GFF1839at 507.578 kb on - strand, within GFF1839at 507.578 kb on - strand, within GFF1839at 507.773 kb on + strandat 507.774 kb on - strandat 507.774 kb on - strandat 507.774 kb on - strandat 507.782 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.796 kb on + strandat 507.797 kb on - strandat 507.797 kb on - strandat 507.797 kb on - strandat 507.797 kb on - strandat 507.797 kb on - strandat 507.797 kb on - strandat 507.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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504,672 - +0.2
505,209 + GFF1837 0.56 -0.3
505,209 + GFF1837 0.56 -0.0
505,210 - GFF1837 0.57 +0.1
505,210 - GFF1837 0.57 -0.1
505,210 - GFF1837 0.57 -0.6
505,210 - GFF1837 0.57 -0.2
505,296 + GFF1837 0.66 -0.6
505,296 + GFF1837 0.66 +0.9
505,297 - GFF1837 0.66 -0.5
505,297 - GFF1837 0.66 -1.1
505,749 + -0.3
505,749 + -0.1
505,749 + +1.3
505,750 - +0.3
505,750 - -0.5
505,750 - +0.2
506,121 + GFF1838 0.37 -0.3
506,208 + GFF1838 0.44 -0.3
506,208 + GFF1838 0.44 +0.2
506,254 - GFF1838 0.47 -0.4
506,433 + GFF1838 0.62 -0.3
506,433 + GFF1838 0.62 +0.9
506,434 - GFF1838 0.62 +0.3
506,434 - GFF1838 0.62 -1.7
506,583 + GFF1838 0.74 +0.2
506,584 - GFF1838 0.74 +0.2
506,584 - GFF1838 0.74 -0.1
506,584 - GFF1838 0.74 -1.4
506,652 + GFF1838 0.79 -0.3
506,652 + GFF1838 0.79 +0.5
506,653 - GFF1838 0.79 -0.3
506,728 - GFF1838 0.85 -0.2
506,728 - GFF1838 0.85 +0.1
506,921 + +0.6
506,922 - -0.9
506,922 - -0.1
506,922 - +0.7
506,922 - -0.3
507,001 + -0.5
507,130 + GFF1839 0.25 -0.5
507,130 + GFF1839 0.25 -0.6
507,130 + GFF1839 0.25 -1.6
507,130 + GFF1839 0.25 -0.3
507,131 - GFF1839 0.25 +0.2
507,131 - GFF1839 0.25 +0.6
507,131 - GFF1839 0.25 +0.6
507,131 - GFF1839 0.25 +0.7
507,131 - GFF1839 0.25 -0.3
507,427 + GFF1839 0.63 +1.1
507,427 + GFF1839 0.63 -1.3
507,427 + GFF1839 0.63 -0.1
507,427 + GFF1839 0.63 -0.5
507,428 - GFF1839 0.63 -0.6
507,428 - GFF1839 0.63 -0.9
507,539 - GFF1839 0.77 -0.0
507,578 - GFF1839 0.82 +0.3
507,578 - GFF1839 0.82 +0.6
507,578 - GFF1839 0.82 -0.4
507,773 + +0.3
507,774 - -0.7
507,774 - -0.2
507,774 - +0.2
507,782 + -0.5
507,796 + +0.3
507,796 + -0.5
507,796 + -0.0
507,796 + -1.1
507,796 + -1.4
507,796 + -0.7
507,796 + -0.2
507,796 + +0.2
507,796 + -0.7
507,797 - +1.1
507,797 - -1.5
507,797 - +0.3
507,797 - +0.0
507,797 - +0.8
507,797 - -1.9
507,817 + -0.7

Or see this region's nucleotide sequence