Strain Fitness in Variovorax sp. SCN45 around GFF174

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF173 and GFF174 are separated by 100 nucleotidesGFF174 and GFF175 are separated by 36 nucleotidesGFF175 and GFF176 overlap by 1 nucleotides GFF173 - Hexuronate utilization operon transcriptional repressor ExuR, at 204,593 to 205,327 GFF173 GFF174 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 205,428 to 206,258 GFF174 GFF175 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,295 to 206,960 GFF175 GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619 GFF176 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.439 kb on + strandat 204.439 kb on + strandat 204.462 kb on + strandat 204.462 kb on + strandat 204.463 kb on - strandat 204.463 kb on - strandat 204.501 kb on + strandat 204.502 kb on - strandat 204.502 kb on - strandat 204.530 kb on + strandat 204.537 kb on - strandat 204.542 kb on + strandat 204.556 kb on + strandat 204.556 kb on + strandat 204.557 kb on - strandat 204.557 kb on - strandat 204.653 kb on + strandat 204.653 kb on + strandat 204.653 kb on + strandat 204.654 kb on - strandat 204.654 kb on - strandat 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.836 kb on + strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.837 kb on - strand, within GFF173at 204.884 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.001 kb on + strand, within GFF173at 205.002 kb on - strand, within GFF173at 205.002 kb on - strand, within GFF173at 205.002 kb on - strand, within GFF173at 205.002 kb on - strand, within GFF173at 205.410 kb on + strandat 205.410 kb on + strandat 205.410 kb on + strandat 205.411 kb on - strandat 205.411 kb on - strandat 205.411 kb on - strandat 205.806 kb on + strand, within GFF174at 205.806 kb on + strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.807 kb on - strand, within GFF174at 205.908 kb on + strand, within GFF174at 205.908 kb on + strand, within GFF174at 205.909 kb on - strand, within GFF174at 205.909 kb on - strand, within GFF174at 205.909 kb on - strand, within GFF174at 206.176 kb on - strandat 206.176 kb on - strandat 206.334 kb on + strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.430 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.456 kb on + strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.457 kb on - strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.466 kb on + strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.467 kb on - strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.517 kb on + strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.518 kb on - strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.601 kb on + strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.602 kb on - strand, within GFF175at 206.844 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.883 kb on + strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.884 kb on - strand, within GFF175at 206.928 kb on + strandat 206.928 kb on + strandat 206.928 kb on + strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.929 kb on - strandat 206.996 kb on + strandat 206.997 kb on - strandat 207.173 kb on + strand, within GFF176at 207.173 kb on + strand, within GFF176at 207.174 kb on - strand, within GFF176at 207.185 kb on + strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176at 207.186 kb on - strand, within GFF176

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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204,439 + +0.5
204,439 + -1.0
204,462 + +0.3
204,462 + +0.3
204,463 - +1.0
204,463 - -0.5
204,501 + -0.7
204,502 - -0.8
204,502 - +0.5
204,530 + +0.3
204,537 - -0.5
204,542 + -0.5
204,556 + -0.6
204,556 + +0.4
204,557 - -0.3
204,557 - -0.0
204,653 + -0.3
204,653 + -0.0
204,653 + -0.8
204,654 - -0.5
204,654 - -0.4
204,836 + GFF173 0.33 +0.3
204,836 + GFF173 0.33 +0.4
204,836 + GFF173 0.33 +0.5
204,836 + GFF173 0.33 +0.4
204,836 + GFF173 0.33 -0.4
204,836 + GFF173 0.33 -1.5
204,836 + GFF173 0.33 -1.7
204,836 + GFF173 0.33 -0.3
204,836 + GFF173 0.33 +1.6
204,836 + GFF173 0.33 -0.0
204,836 + GFF173 0.33 -1.0
204,836 + GFF173 0.33 +0.9
204,836 + GFF173 0.33 +0.3
204,836 + GFF173 0.33 -1.0
204,836 + GFF173 0.33 -0.3
204,836 + GFF173 0.33 -0.5
204,836 + GFF173 0.33 -0.4
204,836 + GFF173 0.33 -1.5
204,836 + GFF173 0.33 -0.1
204,837 - GFF173 0.33 +1.5
204,837 - GFF173 0.33 +0.7
204,837 - GFF173 0.33 -0.8
204,837 - GFF173 0.33 -0.6
204,837 - GFF173 0.33 -0.1
204,837 - GFF173 0.33 -0.4
204,837 - GFF173 0.33 +0.5
204,837 - GFF173 0.33 -0.0
204,837 - GFF173 0.33 +0.7
204,837 - GFF173 0.33 +0.3
204,837 - GFF173 0.33 -0.3
204,884 + GFF173 0.40 +0.9
205,001 + GFF173 0.56 -0.3
205,001 + GFF173 0.56 -0.1
205,001 + GFF173 0.56 -0.6
205,001 + GFF173 0.56 -0.6
205,001 + GFF173 0.56 -0.9
205,001 + GFF173 0.56 -0.4
205,001 + GFF173 0.56 +0.4
205,002 - GFF173 0.56 +1.4
205,002 - GFF173 0.56 -0.3
205,002 - GFF173 0.56 -0.5
205,002 - GFF173 0.56 -2.6
205,410 + +0.8
205,410 + +1.3
205,410 + -0.8
205,411 - +1.3
205,411 - -1.3
205,411 - +0.7
205,806 + GFF174 0.45 -0.3
205,806 + GFF174 0.45 +0.5
205,807 - GFF174 0.46 +0.1
205,807 - GFF174 0.46 -0.2
205,807 - GFF174 0.46 +0.2
205,908 + GFF174 0.58 +0.4
205,908 + GFF174 0.58 -0.1
205,909 - GFF174 0.58 +0.4
205,909 - GFF174 0.58 -0.2
205,909 - GFF174 0.58 -0.5
206,176 - +0.4
206,176 - +0.3
206,334 + +0.3
206,335 - -0.3
206,335 - +0.4
206,430 + GFF175 0.20 -0.6
206,456 + GFF175 0.24 +2.1
206,456 + GFF175 0.24 -0.2
206,457 - GFF175 0.24 +0.1
206,457 - GFF175 0.24 -0.8
206,457 - GFF175 0.24 -0.9
206,466 + GFF175 0.26 +0.4
206,466 + GFF175 0.26 -0.1
206,466 + GFF175 0.26 -1.6
206,466 + GFF175 0.26 -0.3
206,467 - GFF175 0.26 -0.0
206,467 - GFF175 0.26 -1.3
206,467 - GFF175 0.26 +0.7
206,467 - GFF175 0.26 -0.2
206,517 + GFF175 0.33 -0.7
206,517 + GFF175 0.33 -0.1
206,518 - GFF175 0.33 -0.3
206,518 - GFF175 0.33 -1.0
206,601 + GFF175 0.46 -0.3
206,601 + GFF175 0.46 +1.3
206,601 + GFF175 0.46 +0.4
206,602 - GFF175 0.46 -0.4
206,602 - GFF175 0.46 +0.1
206,602 - GFF175 0.46 -1.6
206,602 - GFF175 0.46 +0.2
206,844 + GFF175 0.82 +0.0
206,883 + GFF175 0.88 +0.2
206,883 + GFF175 0.88 +0.1
206,883 + GFF175 0.88 +0.4
206,883 + GFF175 0.88 +1.6
206,883 + GFF175 0.88 -0.9
206,884 - GFF175 0.88 +0.3
206,884 - GFF175 0.88 -0.8
206,884 - GFF175 0.88 -0.4
206,884 - GFF175 0.88 +0.3
206,884 - GFF175 0.88 -0.7
206,884 - GFF175 0.88 -0.1
206,884 - GFF175 0.88 +0.3
206,928 + -1.2
206,928 + -3.0
206,928 + -0.1
206,929 - +0.5
206,929 - -0.3
206,929 - +1.3
206,929 - +0.4
206,929 - -0.2
206,996 + -0.7
206,997 - -0.7
207,173 + GFF176 0.32 -1.3
207,173 + GFF176 0.32 +0.3
207,174 - GFF176 0.32 -0.4
207,185 + GFF176 0.34 +0.1
207,186 - GFF176 0.34 -0.3
207,186 - GFF176 0.34 +0.5
207,186 - GFF176 0.34 -0.6
207,186 - GFF176 0.34 +0.1

Or see this region's nucleotide sequence