Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1666 and GFF1667 overlap by 4 nucleotides GFF1667 and GFF1668 are separated by 3 nucleotides
GFF1666 - N-methylhydantoinase A (EC 3.5.2.14), at 309,992 to 312,049
GFF1666
GFF1667 - N-methylhydantoinase B (EC 3.5.2.14), at 312,046 to 313,728
GFF1667
GFF1668 - BUG/TctC family periplasmic protein, at 313,732 to 314,700
GFF1668
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.391 kb on + strand, within GFF1666 at 311.391 kb on + strand, within GFF1666 at 311.553 kb on + strand, within GFF1666 at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.084 kb on - strand at 312.084 kb on - strand at 312.084 kb on - strand at 312.632 kb on + strand, within GFF1667 at 312.633 kb on - strand, within GFF1667 at 312.839 kb on + strand, within GFF1667 at 312.839 kb on + strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 313.007 kb on + strand, within GFF1667 at 313.103 kb on + strand, within GFF1667 at 313.307 kb on + strand, within GFF1667 at 313.307 kb on + strand, within GFF1667 at 313.308 kb on - strand, within GFF1667 at 313.308 kb on - strand, within GFF1667 at 313.361 kb on + strand, within GFF1667 at 313.361 kb on + strand, within GFF1667 at 313.367 kb on + strand, within GFF1667 at 313.367 kb on + strand, within GFF1667 at 313.367 kb on + strand, within GFF1667 at 313.433 kb on + strand, within GFF1667 at 313.976 kb on + strand, within GFF1668 at 313.977 kb on - strand, within GFF1668 at 314.391 kb on - strand, within GFF1668
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 311,391 + GFF1666 0.68 -0.3 311,391 + GFF1666 0.68 +0.3 311,553 + GFF1666 0.76 -1.6 312,083 + +0.4 312,083 + -0.6 312,083 + +1.0 312,083 + -0.7 312,083 + -0.5 312,084 - +2.0 312,084 - +0.4 312,084 - +0.7 312,632 + GFF1667 0.35 -1.0 312,633 - GFF1667 0.35 -0.0 312,839 + GFF1667 0.47 -0.4 312,839 + GFF1667 0.47 -0.6 312,840 - GFF1667 0.47 -0.9 312,840 - GFF1667 0.47 +1.0 312,840 - GFF1667 0.47 -0.0 312,840 - GFF1667 0.47 -1.1 312,840 - GFF1667 0.47 -0.9 313,007 + GFF1667 0.57 +0.7 313,103 + GFF1667 0.63 -0.2 313,307 + GFF1667 0.75 -2.7 313,307 + GFF1667 0.75 -0.5 313,308 - GFF1667 0.75 -0.8 313,308 - GFF1667 0.75 +0.1 313,361 + GFF1667 0.78 -0.4 313,361 + GFF1667 0.78 +0.1 313,367 + GFF1667 0.78 -0.6 313,367 + GFF1667 0.78 -0.9 313,367 + GFF1667 0.78 +0.5 313,433 + GFF1667 0.82 -0.1 313,976 + GFF1668 0.25 -1.0 313,977 - GFF1668 0.25 +0.3 314,391 - GFF1668 0.68 -0.4
Or see this region's nucleotide sequence