Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1585 and GFF1586 are separated by 4 nucleotides GFF1586 and GFF1587 are separated by 0 nucleotides GFF1587 and GFF1588 are separated by 197 nucleotides
GFF1585 - Outer membrane porin protein 32 precursor, at 183,831 to 185,048
GFF1585
GFF1586 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 185,053 to 186,078
GFF1586
GFF1587 - no description, at 186,079 to 186,669
GFF1587
GFF1588 - Serine phosphatase RsbU, regulator of sigma subunit, at 186,867 to 188,099
GFF1588
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.294 kb on - strand, within GFF1585 at 184.395 kb on + strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.425 kb on + strand, within GFF1585 at 184.426 kb on - strand, within GFF1585 at 184.426 kb on - strand, within GFF1585 at 184.440 kb on + strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.596 kb on + strand, within GFF1585 at 184.596 kb on + strand, within GFF1585 at 184.597 kb on - strand, within GFF1585 at 184.648 kb on - strand, within GFF1585 at 184.727 kb on + strand, within GFF1585 at 184.728 kb on - strand, within GFF1585 at 184.806 kb on + strand, within GFF1585 at 184.807 kb on - strand, within GFF1585 at 184.807 kb on - strand, within GFF1585 at 184.821 kb on + strand, within GFF1585 at 184.884 kb on + strand, within GFF1585 at 184.884 kb on + strand, within GFF1585 at 184.885 kb on - strand, within GFF1585 at 184.885 kb on - strand, within GFF1585 at 184.885 kb on - strand, within GFF1585 at 184.917 kb on + strand, within GFF1585 at 184.917 kb on + strand, within GFF1585 at 184.918 kb on - strand, within GFF1585 at 185.020 kb on - strand at 185.212 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.404 kb on + strand, within GFF1586 at 185.549 kb on + strand, within GFF1586 at 185.550 kb on - strand, within GFF1586 at 186.052 kb on + strand at 186.170 kb on + strand, within GFF1587 at 186.170 kb on + strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.171 kb on - strand, within GFF1587 at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.690 kb on + strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.691 kb on - strand at 186.715 kb on + strand at 186.715 kb on + strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.716 kb on - strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.807 kb on - strand at 186.810 kb on + strand at 186.810 kb on + strand at 186.829 kb on - strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.833 kb on + strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.834 kb on - strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.837 kb on + strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.838 kb on - strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.846 kb on - strand at 186.885 kb on + strand at 186.886 kb on - strand at 186.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 184,294 - GFF1585 0.38 -0.1 184,395 + GFF1585 0.46 +0.3 184,396 - GFF1585 0.46 +0.0 184,396 - GFF1585 0.46 -0.1 184,396 - GFF1585 0.46 +0.0 184,425 + GFF1585 0.49 -1.1 184,426 - GFF1585 0.49 -1.7 184,426 - GFF1585 0.49 -1.2 184,440 + GFF1585 0.50 +0.0 184,441 - GFF1585 0.50 -0.7 184,441 - GFF1585 0.50 -0.4 184,441 - GFF1585 0.50 -0.3 184,596 + GFF1585 0.63 -0.6 184,596 + GFF1585 0.63 -0.7 184,597 - GFF1585 0.63 -0.1 184,648 - GFF1585 0.67 -0.2 184,727 + GFF1585 0.74 -0.7 184,728 - GFF1585 0.74 +1.5 184,806 + GFF1585 0.80 -1.5 184,807 - GFF1585 0.80 -0.4 184,807 - GFF1585 0.80 -0.4 184,821 + GFF1585 0.81 -0.2 184,884 + GFF1585 0.86 +1.5 184,884 + GFF1585 0.86 +0.6 184,885 - GFF1585 0.87 -1.2 184,885 - GFF1585 0.87 -1.2 184,885 - GFF1585 0.87 -0.7 184,917 + GFF1585 0.89 -0.1 184,917 + GFF1585 0.89 +0.1 184,918 - GFF1585 0.89 -0.9 185,020 - +1.2 185,212 + GFF1586 0.15 -0.9 185,404 + GFF1586 0.34 -1.2 185,404 + GFF1586 0.34 -0.6 185,549 + GFF1586 0.48 -0.8 185,550 - GFF1586 0.48 -0.2 186,052 + -0.0 186,170 + GFF1587 0.15 +1.0 186,170 + GFF1587 0.15 -0.8 186,171 - GFF1587 0.16 -0.3 186,171 - GFF1587 0.16 +0.2 186,688 + -0.7 186,688 + -0.9 186,688 + -0.2 186,689 - +0.7 186,689 - -2.9 186,689 - -1.1 186,689 - +0.1 186,690 + +0.6 186,690 + -0.5 186,690 + +0.7 186,690 + +0.5 186,690 + +0.5 186,691 - +0.8 186,691 - -0.1 186,691 - -0.4 186,691 - +0.8 186,691 - +0.7 186,691 - -0.3 186,715 + -0.5 186,715 + -0.5 186,716 - -0.3 186,716 - -0.7 186,716 - -1.0 186,806 + -0.9 186,806 + -1.8 186,806 + -0.7 186,806 + +0.3 186,806 + -1.9 186,806 + -0.8 186,807 - -0.5 186,807 - -0.5 186,807 - -0.5 186,807 - +1.4 186,807 - -0.5 186,810 + +0.4 186,810 + +0.7 186,829 - -0.2 186,833 + -2.7 186,833 + -0.7 186,833 + -0.8 186,833 + +0.3 186,833 + -0.2 186,833 + -0.2 186,833 + +2.7 186,833 + +0.1 186,833 + +0.0 186,834 - -0.2 186,834 - +0.7 186,834 - +0.2 186,834 - -0.3 186,834 - -0.5 186,834 - -1.3 186,834 - -0.2 186,834 - -0.8 186,837 + -0.1 186,837 + -1.2 186,837 + -0.8 186,838 - -0.8 186,838 - -0.1 186,838 - +0.6 186,845 + -0.1 186,845 + -0.1 186,845 + +0.2 186,845 + -0.5 186,845 + -0.8 186,845 + -0.8 186,845 + +0.4 186,846 - -1.3 186,885 + -0.5 186,886 - -0.1 186,886 - -0.7
Or see this region's nucleotide sequence