Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1510 and GFF1511 are separated by 8 nucleotides GFF1511 and GFF1512 are separated by 145 nucleotides GFF1512 and GFF1513 are separated by 328 nucleotides
GFF1510 - Oxidoreductase, at 103,307 to 104,797
GFF1510
GFF1511 - Transcriptional regulator, LysR family, at 104,806 to 105,795
GFF1511
GFF1512 - no description, at 105,941 to 106,351
GFF1512
GFF1513 - Cytochrome c551/c552, at 106,680 to 107,777
GFF1513
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.269 kb on - strand, within GFF1510 at 104.397 kb on + strand, within GFF1510 at 104.397 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.593 kb on - strand, within GFF1510 at 104.593 kb on - strand, within GFF1510 at 104.850 kb on - strand at 105.004 kb on - strand, within GFF1511 at 105.602 kb on + strand, within GFF1511 at 105.602 kb on + strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.663 kb on - strand, within GFF1511 at 105.666 kb on + strand, within GFF1511 at 105.869 kb on + strand at 105.869 kb on + strand at 105.884 kb on + strand at 105.884 kb on + strand at 105.884 kb on + strand at 105.884 kb on + strand at 105.885 kb on - strand at 105.885 kb on - strand at 105.885 kb on - strand at 105.885 kb on - strand at 105.885 kb on - strand at 105.907 kb on + strand at 105.907 kb on + strand at 105.908 kb on - strand at 106.121 kb on + strand, within GFF1512 at 106.121 kb on + strand, within GFF1512 at 106.122 kb on - strand, within GFF1512 at 106.197 kb on + strand, within GFF1512 at 106.197 kb on + strand, within GFF1512 at 106.198 kb on - strand, within GFF1512 at 106.198 kb on - strand, within GFF1512 at 106.198 kb on - strand, within GFF1512 at 106.298 kb on + strand, within GFF1512 at 106.298 kb on + strand, within GFF1512 at 106.298 kb on + strand, within GFF1512 at 106.298 kb on + strand, within GFF1512 at 106.299 kb on - strand, within GFF1512 at 106.299 kb on - strand, within GFF1512 at 106.572 kb on + strand at 106.572 kb on + strand at 106.584 kb on + strand at 106.615 kb on + strand at 106.615 kb on + strand at 106.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 103,923 + GFF1510 0.41 -0.7 103,923 + GFF1510 0.41 -0.8 103,923 + GFF1510 0.41 +0.1 103,923 + GFF1510 0.41 +0.1 103,923 + GFF1510 0.41 +0.3 103,923 + GFF1510 0.41 +0.3 103,923 + GFF1510 0.41 +0.0 103,924 - GFF1510 0.41 -0.0 103,924 - GFF1510 0.41 +0.3 103,924 - GFF1510 0.41 -0.4 103,924 - GFF1510 0.41 +0.3 104,268 + GFF1510 0.64 -1.2 104,268 + GFF1510 0.64 -1.0 104,268 + GFF1510 0.64 +0.0 104,268 + GFF1510 0.64 +0.3 104,269 - GFF1510 0.65 +0.0 104,397 + GFF1510 0.73 -0.4 104,397 + GFF1510 0.73 -0.5 104,592 + GFF1510 0.86 -0.8 104,592 + GFF1510 0.86 -0.2 104,592 + GFF1510 0.86 +0.6 104,592 + GFF1510 0.86 -0.4 104,593 - GFF1510 0.86 +1.0 104,593 - GFF1510 0.86 +0.5 104,850 - +0.3 105,004 - GFF1511 0.20 -0.6 105,602 + GFF1511 0.80 -0.7 105,602 + GFF1511 0.80 -0.8 105,603 - GFF1511 0.81 +1.0 105,603 - GFF1511 0.81 -0.2 105,603 - GFF1511 0.81 -0.5 105,603 - GFF1511 0.81 +1.0 105,603 - GFF1511 0.81 -0.6 105,603 - GFF1511 0.81 -1.3 105,603 - GFF1511 0.81 +0.1 105,663 - GFF1511 0.87 -0.5 105,666 + GFF1511 0.87 -0.9 105,869 + -0.6 105,869 + -1.4 105,884 + -0.6 105,884 + -0.1 105,884 + -0.5 105,884 + -0.2 105,885 - +1.0 105,885 - +0.1 105,885 - -0.1 105,885 - -1.2 105,885 - +1.6 105,907 + +0.2 105,907 + -0.7 105,908 - +1.1 106,121 + GFF1512 0.44 -0.5 106,121 + GFF1512 0.44 -0.5 106,122 - GFF1512 0.44 +0.0 106,197 + GFF1512 0.62 +0.2 106,197 + GFF1512 0.62 -0.5 106,198 - GFF1512 0.63 -0.6 106,198 - GFF1512 0.63 -0.6 106,198 - GFF1512 0.63 -0.8 106,298 + GFF1512 0.87 -0.7 106,298 + GFF1512 0.87 -0.4 106,298 + GFF1512 0.87 +0.0 106,298 + GFF1512 0.87 +0.2 106,299 - GFF1512 0.87 -0.6 106,299 - GFF1512 0.87 -0.5 106,572 + -0.3 106,572 + -0.3 106,584 + +0.3 106,615 + -1.1 106,615 + -0.6 106,616 - -1.5
Or see this region's nucleotide sequence