Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1471 and GFF1472 overlap by 8 nucleotides GFF1472 and GFF1473 are separated by 42 nucleotides
GFF1471 - Uncharacterized MFS-type transporter, at 62,193 to 63,647
GFF1471
GFF1472 - Tricarboxylate transport protein TctC, at 63,640 to 64,608
GFF1472
GFF1473 - Amidase family protein BBta_1912, at 64,651 to 66,060
GFF1473
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.767 kb on + strand, within GFF1471 at 62.768 kb on - strand, within GFF1471 at 62.819 kb on + strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.820 kb on - strand, within GFF1471 at 62.993 kb on - strand, within GFF1471 at 63.303 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.472 kb on + strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.473 kb on - strand, within GFF1471 at 63.541 kb on - strand at 63.687 kb on - strand at 64.072 kb on - strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.211 kb on + strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.212 kb on - strand, within GFF1472 at 64.292 kb on + strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.293 kb on - strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.307 kb on + strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.308 kb on - strand, within GFF1472 at 64.615 kb on + strand at 64.616 kb on - strand at 64.652 kb on + strand at 64.652 kb on + strand at 64.653 kb on - strand at 64.653 kb on - strand at 64.950 kb on + strand, within GFF1473 at 65.441 kb on + strand, within GFF1473 at 65.442 kb on - strand, within GFF1473 at 65.442 kb on - strand, within GFF1473 at 65.447 kb on + strand, within GFF1473 at 65.447 kb on + strand, within GFF1473 at 65.448 kb on - strand, within GFF1473 at 65.448 kb on - strand, within GFF1473
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 62,767 + GFF1471 0.39 +0.6 62,768 - GFF1471 0.40 +0.0 62,819 + GFF1471 0.43 -0.3 62,820 - GFF1471 0.43 -0.4 62,820 - GFF1471 0.43 -0.6 62,820 - GFF1471 0.43 -0.8 62,993 - GFF1471 0.55 -1.5 63,303 + GFF1471 0.76 -0.1 63,472 + GFF1471 0.88 -0.2 63,472 + GFF1471 0.88 -0.6 63,472 + GFF1471 0.88 -0.4 63,472 + GFF1471 0.88 +0.0 63,473 - GFF1471 0.88 +0.0 63,473 - GFF1471 0.88 -0.9 63,473 - GFF1471 0.88 -1.1 63,541 - +0.1 63,687 - -1.0 64,072 - GFF1472 0.45 -0.5 64,211 + GFF1472 0.59 -1.3 64,211 + GFF1472 0.59 -0.4 64,212 - GFF1472 0.59 -0.4 64,212 - GFF1472 0.59 -0.6 64,292 + GFF1472 0.67 -0.7 64,293 - GFF1472 0.67 +0.0 64,293 - GFF1472 0.67 -0.4 64,307 + GFF1472 0.69 -0.1 64,307 + GFF1472 0.69 +0.3 64,307 + GFF1472 0.69 -1.0 64,308 - GFF1472 0.69 +0.0 64,308 - GFF1472 0.69 -0.6 64,308 - GFF1472 0.69 -1.8 64,308 - GFF1472 0.69 +0.1 64,615 + -0.6 64,616 - +0.3 64,652 + -0.8 64,652 + +0.5 64,653 - -0.8 64,653 - -0.2 64,950 + GFF1473 0.21 -0.7 65,441 + GFF1473 0.56 -0.2 65,442 - GFF1473 0.56 +2.4 65,442 - GFF1473 0.56 -0.4 65,447 + GFF1473 0.56 -0.2 65,447 + GFF1473 0.56 -0.9 65,448 - GFF1473 0.57 -0.1 65,448 - GFF1473 0.57 -0.4
Or see this region's nucleotide sequence