Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1385 and GFF1386 are separated by 102 nucleotides GFF1386 and GFF1387 are separated by 41 nucleotides GFF1387 and GFF1388 overlap by 4 nucleotides
GFF1385 - Multidrug resistance transporter, Bcr/CflA family, at 731,420 to 732,634
GFF1385
GFF1386 - Uncharacterized transporter YebQ, major facilitator superfamily (MFS), at 732,737 to 734,095
GFF1386
GFF1387 - Paraquat-inducible protein A, at 734,137 to 734,763
GFF1387
GFF1388 - Paraquat-inducible protein A, at 734,760 to 735,506
GFF1388
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.029 kb on + strand, within GFF1385 at 732.056 kb on + strand, within GFF1385 at 732.107 kb on + strand, within GFF1385 at 732.107 kb on + strand, within GFF1385 at 732.108 kb on - strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.164 kb on + strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.165 kb on - strand, within GFF1385 at 732.308 kb on + strand, within GFF1385 at 732.309 kb on - strand, within GFF1385 at 732.309 kb on - strand, within GFF1385 at 732.353 kb on + strand, within GFF1385 at 732.354 kb on - strand, within GFF1385 at 732.354 kb on - strand, within GFF1385 at 732.685 kb on - strand at 732.685 kb on - strand at 732.863 kb on + strand at 732.935 kb on + strand, within GFF1386 at 732.935 kb on + strand, within GFF1386 at 732.936 kb on - strand, within GFF1386 at 732.936 kb on - strand, within GFF1386 at 733.082 kb on + strand, within GFF1386 at 733.082 kb on + strand, within GFF1386 at 733.082 kb on + strand, within GFF1386 at 733.082 kb on + strand, within GFF1386 at 733.083 kb on - strand, within GFF1386 at 733.083 kb on - strand, within GFF1386 at 733.083 kb on - strand, within GFF1386 at 733.083 kb on - strand, within GFF1386 at 733.455 kb on - strand, within GFF1386 at 733.574 kb on + strand, within GFF1386 at 733.574 kb on + strand, within GFF1386 at 733.574 kb on - strand, within GFF1386 at 733.575 kb on - strand, within GFF1386 at 733.575 kb on - strand, within GFF1386 at 734.102 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.127 kb on - strand at 734.127 kb on - strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.465 kb on - strand, within GFF1387 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.007 kb on + strand, within GFF1388 at 735.008 kb on - strand, within GFF1388 at 735.060 kb on + strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.087 kb on + strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 732,029 + GFF1385 0.50 -0.1 732,056 + GFF1385 0.52 -0.3 732,107 + GFF1385 0.57 +0.0 732,107 + GFF1385 0.57 -0.4 732,108 - GFF1385 0.57 +0.2 732,164 + GFF1385 0.61 -0.8 732,164 + GFF1385 0.61 +0.9 732,164 + GFF1385 0.61 -0.0 732,164 + GFF1385 0.61 -0.7 732,164 + GFF1385 0.61 -1.0 732,164 + GFF1385 0.61 -0.3 732,164 + GFF1385 0.61 -0.6 732,164 + GFF1385 0.61 -0.3 732,165 - GFF1385 0.61 -1.5 732,165 - GFF1385 0.61 -0.1 732,165 - GFF1385 0.61 -0.6 732,165 - GFF1385 0.61 +0.3 732,165 - GFF1385 0.61 +0.3 732,165 - GFF1385 0.61 -0.1 732,165 - GFF1385 0.61 -0.3 732,165 - GFF1385 0.61 -0.5 732,165 - GFF1385 0.61 -0.3 732,165 - GFF1385 0.61 -1.8 732,308 + GFF1385 0.73 +0.5 732,309 - GFF1385 0.73 +0.4 732,309 - GFF1385 0.73 +0.3 732,353 + GFF1385 0.77 +1.3 732,354 - GFF1385 0.77 +0.1 732,354 - GFF1385 0.77 +0.2 732,685 - -0.9 732,685 - -1.0 732,863 + -1.7 732,935 + GFF1386 0.15 +0.3 732,935 + GFF1386 0.15 +0.3 732,936 - GFF1386 0.15 +0.8 732,936 - GFF1386 0.15 +0.3 733,082 + GFF1386 0.25 -0.1 733,082 + GFF1386 0.25 -1.8 733,082 + GFF1386 0.25 +0.1 733,082 + GFF1386 0.25 +0.3 733,083 - GFF1386 0.25 +1.3 733,083 - GFF1386 0.25 +1.0 733,083 - GFF1386 0.25 +1.3 733,083 - GFF1386 0.25 -0.9 733,455 - GFF1386 0.53 +0.1 733,574 + GFF1386 0.62 +0.1 733,574 + GFF1386 0.62 +0.6 733,574 - GFF1386 0.62 -0.9 733,575 - GFF1386 0.62 -1.7 733,575 - GFF1386 0.62 -0.3 734,102 + +1.6 734,115 + +0.4 734,115 + -0.4 734,115 + -0.4 734,116 - +1.9 734,116 - -1.2 734,116 - -0.8 734,126 + +0.5 734,126 + +2.3 734,126 + -0.7 734,126 + +1.3 734,127 - -0.5 734,127 - +0.4 734,164 + -1.0 734,164 + -0.3 734,164 + -0.3 734,164 + -0.1 734,465 - GFF1387 0.52 -2.8 735,003 + GFF1388 0.33 -1.5 735,003 + GFF1388 0.33 +0.0 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 +0.3 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 -0.7 735,003 + GFF1388 0.33 -0.0 735,003 + GFF1388 0.33 +0.2 735,003 + GFF1388 0.33 +0.5 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 -1.0 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 +1.3 735,003 + GFF1388 0.33 +0.2 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 -0.6 735,003 + GFF1388 0.33 -1.7 735,003 + GFF1388 0.33 +0.6 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 -1.0 735,004 - GFF1388 0.33 -0.2 735,004 - GFF1388 0.33 -0.6 735,004 - GFF1388 0.33 -0.8 735,004 - GFF1388 0.33 -1.8 735,004 - GFF1388 0.33 -0.7 735,004 - GFF1388 0.33 -1.0 735,004 - GFF1388 0.33 +0.7 735,004 - GFF1388 0.33 -0.5 735,004 - GFF1388 0.33 +0.8 735,004 - GFF1388 0.33 -1.4 735,004 - GFF1388 0.33 +0.4 735,004 - GFF1388 0.33 +0.2 735,004 - GFF1388 0.33 -0.8 735,004 - GFF1388 0.33 -1.8 735,004 - GFF1388 0.33 +0.3 735,007 + GFF1388 0.33 -0.6 735,008 - GFF1388 0.33 -1.4 735,060 + GFF1388 0.40 +0.6 735,061 - GFF1388 0.40 +0.1 735,061 - GFF1388 0.40 +0.0 735,061 - GFF1388 0.40 -1.0 735,087 + GFF1388 0.44 -2.3 735,088 - GFF1388 0.44 -1.5 735,088 - GFF1388 0.44 -1.3 735,088 - GFF1388 0.44 -0.7 735,088 - GFF1388 0.44 -0.7
Or see this region's nucleotide sequence