Strain Fitness in Variovorax sp. SCN45 around GFF1335

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1334 and GFF1335 are separated by 114 nucleotidesGFF1335 and GFF1336 are separated by 142 nucleotides GFF1334 - Cocaine esterase (EC 3.1.1.-), at 673,401 to 675,287 GFF1334 GFF1335 - 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type, at 675,402 to 677,045 GFF1335 GFF1336 - ABC transporter, substrate-binding protein RSc1750, at 677,188 to 678,417 GFF1336 Position (kb) 675 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 674.572 kb on - strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.635 kb on - strand, within GFF1334at 674.635 kb on - strand, within GFF1334at 674.757 kb on + strand, within GFF1334at 674.758 kb on - strand, within GFF1334at 674.758 kb on - strand, within GFF1334at 674.857 kb on - strand, within GFF1334at 675.048 kb on - strand, within GFF1334at 675.162 kb on + strandat 675.162 kb on + strandat 675.172 kb on - strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.391 kb on - strandat 675.399 kb on + strandat 675.399 kb on + strandat 675.400 kb on - strandat 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.877 kb on - strand, within GFF1335at 675.877 kb on - strand, within GFF1335at 675.909 kb on + strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.955 kb on - strand, within GFF1335at 675.955 kb on - strand, within GFF1335at 675.993 kb on + strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 676.023 kb on + strand, within GFF1335at 676.135 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.186 kb on - strand, within GFF1335at 676.186 kb on - strand, within GFF1335at 676.356 kb on + strand, within GFF1335at 676.356 kb on + strand, within GFF1335at 676.356 kb on + strand, within GFF1335at 676.357 kb on - strand, within GFF1335at 676.357 kb on - strand, within GFF1335at 676.357 kb on - strand, within GFF1335at 676.357 kb on - strand, within GFF1335at 676.357 kb on - strand, within GFF1335at 676.558 kb on - strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.599 kb on + strand, within GFF1335at 676.600 kb on - strand, within GFF1335at 676.600 kb on - strand, within GFF1335at 676.600 kb on - strand, within GFF1335at 676.696 kb on - strand, within GFF1335at 676.696 kb on - strand, within GFF1335at 676.908 kb on + strandat 676.909 kb on - strandat 676.909 kb on - strandat 676.909 kb on - strandat 676.909 kb on - strandat 676.909 kb on - strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.025 kb on + strandat 677.026 kb on - strandat 677.026 kb on - strandat 677.026 kb on - strandat 677.150 kb on + strandat 677.150 kb on + strandat 677.150 kb on + strandat 677.151 kb on - strandat 677.151 kb on - strandat 677.151 kb on - strandat 677.151 kb on - strandat 677.210 kb on + strandat 677.210 kb on + strandat 677.211 kb on - strandat 677.223 kb on + strandat 677.223 kb on + strandat 677.223 kb on + strandat 677.224 kb on - strandat 677.238 kb on + strandat 677.474 kb on - strand, within GFF1336at 677.566 kb on + strand, within GFF1336at 677.566 kb on + strand, within GFF1336at 677.566 kb on + strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.567 kb on - strand, within GFF1336at 677.575 kb on + strand, within GFF1336at 677.575 kb on + strand, within GFF1336at 677.575 kb on + strand, within GFF1336at 677.575 kb on + strand, within GFF1336at 677.617 kb on + strand, within GFF1336at 677.617 kb on + strand, within GFF1336at 677.617 kb on + strand, within GFF1336at 677.617 kb on + strand, within GFF1336at 677.617 kb on + strand, within GFF1336at 677.618 kb on - strand, within GFF1336at 677.618 kb on - strand, within GFF1336at 677.707 kb on + strand, within GFF1336at 677.708 kb on - strand, within GFF1336at 677.708 kb on - strand, within GFF1336at 677.725 kb on + strand, within GFF1336at 677.752 kb on + strand, within GFF1336at 677.752 kb on + strand, within GFF1336at 677.752 kb on + strand, within GFF1336at 677.753 kb on - strand, within GFF1336at 677.753 kb on - strand, within GFF1336at 677.753 kb on - strand, within GFF1336at 677.845 kb on + strand, within GFF1336at 677.846 kb on - strand, within GFF1336at 677.846 kb on - strand, within GFF1336at 677.965 kb on + strand, within GFF1336at 677.965 kb on + strand, within GFF1336at 677.965 kb on + strand, within GFF1336at 677.966 kb on - strand, within GFF1336at 677.966 kb on - strand, within GFF1336at 677.966 kb on - strand, within GFF1336at 677.966 kb on - strand, within GFF1336at 677.966 kb on - strand, within GFF1336at 677.968 kb on + strand, within GFF1336at 677.968 kb on + strand, within GFF1336at 677.968 kb on + strand, within GFF1336at 677.968 kb on + strand, within GFF1336at 677.969 kb on - strand, within GFF1336at 677.969 kb on - strand, within GFF1336at 677.969 kb on - strand, within GFF1336at 678.026 kb on - strand, within GFF1336at 678.026 kb on - strand, within GFF1336at 678.037 kb on + strand, within GFF1336at 678.037 kb on + strand, within GFF1336at 678.038 kb on - strand, within GFF1336

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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674,572 - GFF1334 0.62 -0.3
674,634 + GFF1334 0.65 -0.2
674,634 + GFF1334 0.65 -0.3
674,634 + GFF1334 0.65 +0.2
674,635 - GFF1334 0.65 +0.6
674,635 - GFF1334 0.65 -0.1
674,757 + GFF1334 0.72 +0.3
674,758 - GFF1334 0.72 -0.4
674,758 - GFF1334 0.72 -0.1
674,857 - GFF1334 0.77 +0.7
675,048 - GFF1334 0.87 +0.3
675,162 + -1.4
675,162 + +0.3
675,172 - -0.0
675,389 + -2.1
675,389 + +0.0
675,389 + -0.5
675,389 + -0.5
675,390 - +0.4
675,390 - -0.0
675,390 - +0.0
675,390 - +0.8
675,390 - -0.1
675,390 - -0.7
675,390 - -0.7
675,390 - -0.8
675,390 - +1.7
675,391 - +0.6
675,399 + -0.7
675,399 + -0.0
675,400 - -0.5
675,642 + GFF1335 0.15 -1.6
675,642 + GFF1335 0.15 -0.2
675,642 + GFF1335 0.15 +0.2
675,642 + GFF1335 0.15 +0.1
675,643 - GFF1335 0.15 -0.1
675,643 - GFF1335 0.15 -0.1
675,643 - GFF1335 0.15 +0.3
675,643 - GFF1335 0.15 +2.9
675,643 - GFF1335 0.15 +1.3
675,645 + GFF1335 0.15 -0.4
675,645 + GFF1335 0.15 -0.1
675,645 + GFF1335 0.15 -0.3
675,646 - GFF1335 0.15 +1.3
675,646 - GFF1335 0.15 -1.3
675,646 - GFF1335 0.15 -0.3
675,646 - GFF1335 0.15 +1.3
675,876 + GFF1335 0.29 -0.3
675,876 + GFF1335 0.29 -0.7
675,876 + GFF1335 0.29 +0.3
675,876 + GFF1335 0.29 -0.0
675,877 - GFF1335 0.29 -0.6
675,877 - GFF1335 0.29 -0.4
675,909 + GFF1335 0.31 -0.5
675,910 - GFF1335 0.31 -1.5
675,910 - GFF1335 0.31 -1.0
675,910 - GFF1335 0.31 +0.1
675,954 + GFF1335 0.34 -1.3
675,954 + GFF1335 0.34 -0.8
675,954 + GFF1335 0.34 +0.5
675,954 + GFF1335 0.34 +1.0
675,954 + GFF1335 0.34 +0.1
675,954 + GFF1335 0.34 +0.7
675,954 + GFF1335 0.34 +0.1
675,954 + GFF1335 0.34 -0.4
675,955 - GFF1335 0.34 -0.6
675,955 - GFF1335 0.34 +0.1
675,993 + GFF1335 0.36 -1.1
675,994 - GFF1335 0.36 +0.3
675,994 - GFF1335 0.36 -0.0
675,994 - GFF1335 0.36 +0.2
675,994 - GFF1335 0.36 +0.1
676,023 + GFF1335 0.38 +0.7
676,135 + GFF1335 0.45 -0.9
676,185 + GFF1335 0.48 +0.0
676,185 + GFF1335 0.48 +1.3
676,185 + GFF1335 0.48 +0.5
676,186 - GFF1335 0.48 -0.7
676,186 - GFF1335 0.48 -0.6
676,356 + GFF1335 0.58 +0.3
676,356 + GFF1335 0.58 +0.1
676,356 + GFF1335 0.58 +0.1
676,357 - GFF1335 0.58 +0.6
676,357 - GFF1335 0.58 -1.5
676,357 - GFF1335 0.58 -0.4
676,357 - GFF1335 0.58 -0.6
676,357 - GFF1335 0.58 +0.2
676,558 - GFF1335 0.70 -0.6
676,599 + GFF1335 0.73 +0.4
676,599 + GFF1335 0.73 -0.0
676,599 + GFF1335 0.73 -0.9
676,599 + GFF1335 0.73 -0.4
676,599 + GFF1335 0.73 -0.8
676,599 + GFF1335 0.73 -0.1
676,599 + GFF1335 0.73 +0.8
676,599 + GFF1335 0.73 -0.2
676,600 - GFF1335 0.73 +0.5
676,600 - GFF1335 0.73 -0.5
676,600 - GFF1335 0.73 +0.0
676,696 - GFF1335 0.79 +0.0
676,696 - GFF1335 0.79 +0.2
676,908 + -0.5
676,909 - +1.9
676,909 - -1.1
676,909 - -0.3
676,909 - -0.1
676,909 - +0.2
677,025 + -1.7
677,025 + +0.7
677,025 + +0.2
677,025 + -0.3
677,025 + -0.8
677,025 + -0.5
677,025 + -0.7
677,025 + -0.1
677,026 - +0.3
677,026 - -1.2
677,026 - +0.0
677,150 + +0.1
677,150 + -0.0
677,150 + -1.6
677,151 - +0.1
677,151 - -0.1
677,151 - -0.5
677,151 - -0.0
677,210 + -0.3
677,210 + +0.3
677,211 - -0.1
677,223 + +0.7
677,223 + -0.8
677,223 + -0.1
677,224 - +0.6
677,238 + -0.6
677,474 - GFF1336 0.23 +0.3
677,566 + GFF1336 0.31 -0.3
677,566 + GFF1336 0.31 -0.1
677,566 + GFF1336 0.31 -0.6
677,567 - GFF1336 0.31 -0.5
677,567 - GFF1336 0.31 -0.4
677,567 - GFF1336 0.31 +0.5
677,567 - GFF1336 0.31 +0.7
677,567 - GFF1336 0.31 -0.7
677,567 - GFF1336 0.31 +0.9
677,567 - GFF1336 0.31 -0.1
677,575 + GFF1336 0.31 +0.5
677,575 + GFF1336 0.31 -0.2
677,575 + GFF1336 0.31 +0.1
677,575 + GFF1336 0.31 -1.9
677,617 + GFF1336 0.35 +0.3
677,617 + GFF1336 0.35 +0.3
677,617 + GFF1336 0.35 +0.5
677,617 + GFF1336 0.35 -0.1
677,617 + GFF1336 0.35 -0.2
677,618 - GFF1336 0.35 -0.5
677,618 - GFF1336 0.35 +0.7
677,707 + GFF1336 0.42 -0.3
677,708 - GFF1336 0.42 -0.7
677,708 - GFF1336 0.42 -0.1
677,725 + GFF1336 0.44 +0.2
677,752 + GFF1336 0.46 -0.3
677,752 + GFF1336 0.46 -1.1
677,752 + GFF1336 0.46 -0.5
677,753 - GFF1336 0.46 -0.5
677,753 - GFF1336 0.46 +0.0
677,753 - GFF1336 0.46 -1.5
677,845 + GFF1336 0.53 -0.6
677,846 - GFF1336 0.53 +0.3
677,846 - GFF1336 0.53 +0.1
677,965 + GFF1336 0.63 -0.2
677,965 + GFF1336 0.63 -0.3
677,965 + GFF1336 0.63 -0.3
677,966 - GFF1336 0.63 -0.3
677,966 - GFF1336 0.63 -0.7
677,966 - GFF1336 0.63 +0.2
677,966 - GFF1336 0.63 -0.7
677,966 - GFF1336 0.63 -1.0
677,968 + GFF1336 0.63 -2.0
677,968 + GFF1336 0.63 +0.7
677,968 + GFF1336 0.63 +0.1
677,968 + GFF1336 0.63 +0.1
677,969 - GFF1336 0.63 -0.1
677,969 - GFF1336 0.63 +0.1
677,969 - GFF1336 0.63 +0.5
678,026 - GFF1336 0.68 -0.4
678,026 - GFF1336 0.68 +0.5
678,037 + GFF1336 0.69 -1.7
678,037 + GFF1336 0.69 -0.2
678,038 - GFF1336 0.69 -0.0

Or see this region's nucleotide sequence