Strain Fitness in Variovorax sp. SCN45 around GFF1334

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1333 and GFF1334 are separated by 46 nucleotidesGFF1334 and GFF1335 are separated by 114 nucleotides GFF1333 - para-nitrobenzyl esterase (intracellular esterase B), at 671,522 to 673,354 GFF1333 GFF1334 - Cocaine esterase (EC 3.1.1.-), at 673,401 to 675,287 GFF1334 GFF1335 - 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type, at 675,402 to 677,045 GFF1335 Position (kb) 673 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.606 kb on - strand, within GFF1333at 672.606 kb on - strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.924 kb on - strand, within GFF1333at 672.924 kb on - strand, within GFF1333at 672.953 kb on + strand, within GFF1333at 672.954 kb on - strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.584 kb on + strandat 673.584 kb on + strandat 673.584 kb on + strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.617 kb on + strand, within GFF1334at 673.617 kb on + strand, within GFF1334at 673.617 kb on + strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.677 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.729 kb on - strand, within GFF1334at 673.729 kb on - strand, within GFF1334at 673.884 kb on + strand, within GFF1334at 673.884 kb on + strand, within GFF1334at 673.885 kb on - strand, within GFF1334at 673.885 kb on - strand, within GFF1334at 673.893 kb on + strand, within GFF1334at 673.893 kb on + strand, within GFF1334at 673.894 kb on - strand, within GFF1334at 673.971 kb on + strand, within GFF1334at 673.971 kb on + strand, within GFF1334at 674.175 kb on + strand, within GFF1334at 674.190 kb on + strand, within GFF1334at 674.190 kb on + strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.289 kb on + strand, within GFF1334at 674.292 kb on + strand, within GFF1334at 674.292 kb on + strand, within GFF1334at 674.293 kb on - strand, within GFF1334at 674.293 kb on - strand, within GFF1334at 674.293 kb on - strand, within GFF1334at 674.370 kb on + strand, within GFF1334at 674.371 kb on - strand, within GFF1334at 674.572 kb on - strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.634 kb on + strand, within GFF1334at 674.635 kb on - strand, within GFF1334at 674.635 kb on - strand, within GFF1334at 674.757 kb on + strand, within GFF1334at 674.758 kb on - strand, within GFF1334at 674.758 kb on - strand, within GFF1334at 674.857 kb on - strand, within GFF1334at 675.048 kb on - strand, within GFF1334at 675.162 kb on + strandat 675.162 kb on + strandat 675.172 kb on - strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.389 kb on + strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.390 kb on - strandat 675.391 kb on - strandat 675.399 kb on + strandat 675.399 kb on + strandat 675.400 kb on - strandat 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.642 kb on + strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.643 kb on - strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.645 kb on + strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.646 kb on - strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.876 kb on + strand, within GFF1335at 675.877 kb on - strand, within GFF1335at 675.877 kb on - strand, within GFF1335at 675.909 kb on + strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.910 kb on - strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.954 kb on + strand, within GFF1335at 675.955 kb on - strand, within GFF1335at 675.955 kb on - strand, within GFF1335at 675.993 kb on + strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 675.994 kb on - strand, within GFF1335at 676.023 kb on + strand, within GFF1335at 676.135 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.185 kb on + strand, within GFF1335at 676.186 kb on - strand, within GFF1335at 676.186 kb on - strand, within GFF1335

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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672,569 + GFF1333 0.57 -0.1
672,569 + GFF1333 0.57 +1.0
672,569 + GFF1333 0.57 -1.0
672,569 + GFF1333 0.57 -1.7
672,569 + GFF1333 0.57 -0.7
672,569 + GFF1333 0.57 -0.5
672,570 - GFF1333 0.57 -0.1
672,570 - GFF1333 0.57 -0.3
672,570 - GFF1333 0.57 -0.0
672,606 - GFF1333 0.59 -1.3
672,606 - GFF1333 0.59 +0.3
672,734 + GFF1333 0.66 +0.3
672,734 + GFF1333 0.66 -0.0
672,734 + GFF1333 0.66 -0.5
672,734 + GFF1333 0.66 +0.8
672,734 + GFF1333 0.66 -0.6
672,734 + GFF1333 0.66 +0.3
672,734 + GFF1333 0.66 -0.7
672,734 + GFF1333 0.66 -0.7
672,734 + GFF1333 0.66 +0.6
672,735 - GFF1333 0.66 -1.0
672,735 - GFF1333 0.66 +1.3
672,735 - GFF1333 0.66 +0.3
672,735 - GFF1333 0.66 +0.6
672,735 - GFF1333 0.66 -0.1
672,735 - GFF1333 0.66 +0.6
672,735 - GFF1333 0.66 -0.4
672,923 + GFF1333 0.76 +0.6
672,923 + GFF1333 0.76 +0.3
672,923 + GFF1333 0.76 +0.7
672,923 + GFF1333 0.76 -1.1
672,924 - GFF1333 0.76 -0.5
672,924 - GFF1333 0.76 -1.0
672,953 + GFF1333 0.78 -0.3
672,954 - GFF1333 0.78 +0.1
673,097 + GFF1333 0.86 +0.1
673,097 + GFF1333 0.86 +1.3
673,097 + GFF1333 0.86 -0.5
673,097 + GFF1333 0.86 -0.2
673,097 + GFF1333 0.86 -0.7
673,097 + GFF1333 0.86 +0.7
673,097 + GFF1333 0.86 -0.1
673,097 + GFF1333 0.86 +0.6
673,097 + GFF1333 0.86 -0.2
673,097 + GFF1333 0.86 -0.6
673,097 + GFF1333 0.86 +0.6
673,097 + GFF1333 0.86 -0.4
673,097 + GFF1333 0.86 +0.1
673,097 + GFF1333 0.86 +0.5
673,098 - GFF1333 0.86 +0.1
673,098 - GFF1333 0.86 -2.9
673,098 - GFF1333 0.86 -0.6
673,098 - GFF1333 0.86 -0.8
673,098 - GFF1333 0.86 -1.5
673,098 - GFF1333 0.86 -1.3
673,584 + -0.1
673,584 + -0.3
673,584 + -1.5
673,585 - +0.3
673,585 - +1.3
673,585 - +0.4
673,585 - -0.1
673,617 + GFF1334 0.11 -0.9
673,617 + GFF1334 0.11 +0.8
673,617 + GFF1334 0.11 -0.8
673,669 - GFF1334 0.14 -0.4
673,669 - GFF1334 0.14 +1.7
673,669 - GFF1334 0.14 +0.1
673,677 + GFF1334 0.15 +0.3
673,728 + GFF1334 0.17 -1.5
673,728 + GFF1334 0.17 -0.6
673,728 + GFF1334 0.17 +0.4
673,729 - GFF1334 0.17 +0.2
673,729 - GFF1334 0.17 -0.4
673,884 + GFF1334 0.26 -0.7
673,884 + GFF1334 0.26 -1.5
673,885 - GFF1334 0.26 +0.3
673,885 - GFF1334 0.26 +1.3
673,893 + GFF1334 0.26 -0.3
673,893 + GFF1334 0.26 -0.5
673,894 - GFF1334 0.26 -0.4
673,971 + GFF1334 0.30 +0.6
673,971 + GFF1334 0.30 -0.5
674,175 + GFF1334 0.41 +0.1
674,190 + GFF1334 0.42 -1.1
674,190 + GFF1334 0.42 -0.4
674,191 - GFF1334 0.42 -0.4
674,191 - GFF1334 0.42 -1.3
674,191 - GFF1334 0.42 +1.3
674,191 - GFF1334 0.42 +0.4
674,191 - GFF1334 0.42 +0.7
674,191 - GFF1334 0.42 +0.0
674,191 - GFF1334 0.42 +0.1
674,289 + GFF1334 0.47 +0.7
674,292 + GFF1334 0.47 -0.6
674,292 + GFF1334 0.47 +0.2
674,293 - GFF1334 0.47 -0.0
674,293 - GFF1334 0.47 -1.7
674,293 - GFF1334 0.47 +0.2
674,370 + GFF1334 0.51 +0.2
674,371 - GFF1334 0.51 +1.1
674,572 - GFF1334 0.62 -0.3
674,634 + GFF1334 0.65 -0.2
674,634 + GFF1334 0.65 -0.3
674,634 + GFF1334 0.65 +0.2
674,635 - GFF1334 0.65 +0.6
674,635 - GFF1334 0.65 -0.1
674,757 + GFF1334 0.72 +0.3
674,758 - GFF1334 0.72 -0.4
674,758 - GFF1334 0.72 -0.1
674,857 - GFF1334 0.77 +0.7
675,048 - GFF1334 0.87 +0.3
675,162 + -1.4
675,162 + +0.3
675,172 - -0.0
675,389 + -2.1
675,389 + +0.0
675,389 + -0.5
675,389 + -0.5
675,390 - +0.4
675,390 - -0.0
675,390 - +0.0
675,390 - +0.8
675,390 - -0.1
675,390 - -0.7
675,390 - -0.7
675,390 - -0.8
675,390 - +1.7
675,391 - +0.6
675,399 + -0.7
675,399 + -0.0
675,400 - -0.5
675,642 + GFF1335 0.15 -1.6
675,642 + GFF1335 0.15 -0.2
675,642 + GFF1335 0.15 +0.2
675,642 + GFF1335 0.15 +0.1
675,643 - GFF1335 0.15 -0.1
675,643 - GFF1335 0.15 -0.1
675,643 - GFF1335 0.15 +0.3
675,643 - GFF1335 0.15 +2.9
675,643 - GFF1335 0.15 +1.3
675,645 + GFF1335 0.15 -0.4
675,645 + GFF1335 0.15 -0.1
675,645 + GFF1335 0.15 -0.3
675,646 - GFF1335 0.15 +1.3
675,646 - GFF1335 0.15 -1.3
675,646 - GFF1335 0.15 -0.3
675,646 - GFF1335 0.15 +1.3
675,876 + GFF1335 0.29 -0.3
675,876 + GFF1335 0.29 -0.7
675,876 + GFF1335 0.29 +0.3
675,876 + GFF1335 0.29 -0.0
675,877 - GFF1335 0.29 -0.6
675,877 - GFF1335 0.29 -0.4
675,909 + GFF1335 0.31 -0.5
675,910 - GFF1335 0.31 -1.5
675,910 - GFF1335 0.31 -1.0
675,910 - GFF1335 0.31 +0.1
675,954 + GFF1335 0.34 -1.3
675,954 + GFF1335 0.34 -0.8
675,954 + GFF1335 0.34 +0.5
675,954 + GFF1335 0.34 +1.0
675,954 + GFF1335 0.34 +0.1
675,954 + GFF1335 0.34 +0.7
675,954 + GFF1335 0.34 +0.1
675,954 + GFF1335 0.34 -0.4
675,955 - GFF1335 0.34 -0.6
675,955 - GFF1335 0.34 +0.1
675,993 + GFF1335 0.36 -1.1
675,994 - GFF1335 0.36 +0.3
675,994 - GFF1335 0.36 -0.0
675,994 - GFF1335 0.36 +0.2
675,994 - GFF1335 0.36 +0.1
676,023 + GFF1335 0.38 +0.7
676,135 + GFF1335 0.45 -0.9
676,185 + GFF1335 0.48 +0.0
676,185 + GFF1335 0.48 +1.3
676,185 + GFF1335 0.48 +0.5
676,186 - GFF1335 0.48 -0.7
676,186 - GFF1335 0.48 -0.6

Or see this region's nucleotide sequence