Strain Fitness in Variovorax sp. SCN45 around GFF1321

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1320 and GFF1321 are separated by 0 nucleotidesGFF1321 and GFF1322 are separated by 93 nucleotides GFF1320 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 655,393 to 657,480 GFF1320 GFF1321 - Probable diguanylate cyclase YeaP, at 657,481 to 658,518 GFF1321 GFF1322 - [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme, at 658,612 to 661,218 GFF1322 Position (kb) 657 658 659Strain fitness (log2 ratio) -2 -1 0 1 2at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.939 kb on + strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 656.940 kb on - strand, within GFF1320at 657.056 kb on + strand, within GFF1320at 657.056 kb on + strand, within GFF1320at 657.091 kb on + strand, within GFF1320at 657.091 kb on + strand, within GFF1320at 657.092 kb on - strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.143 kb on + strand, within GFF1320at 657.144 kb on - strand, within GFF1320at 657.144 kb on - strand, within GFF1320at 657.144 kb on - strand, within GFF1320at 657.144 kb on - strand, within GFF1320at 657.144 kb on - strand, within GFF1320at 657.277 kb on - strandat 657.460 kb on + strandat 657.460 kb on + strandat 657.460 kb on + strandat 657.461 kb on - strandat 657.461 kb on - strandat 657.461 kb on - strandat 657.461 kb on - strandat 657.475 kb on - strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.539 kb on + strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.540 kb on - strandat 657.627 kb on - strand, within GFF1321at 657.627 kb on - strand, within GFF1321at 657.669 kb on + strand, within GFF1321at 657.669 kb on + strand, within GFF1321at 657.670 kb on - strand, within GFF1321at 657.670 kb on - strand, within GFF1321at 657.670 kb on - strand, within GFF1321at 657.670 kb on - strand, within GFF1321at 658.004 kb on + strand, within GFF1321at 658.004 kb on + strand, within GFF1321at 658.004 kb on + strand, within GFF1321at 658.004 kb on + strand, within GFF1321at 658.005 kb on - strand, within GFF1321at 658.005 kb on - strand, within GFF1321at 658.005 kb on - strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.196 kb on + strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.197 kb on - strand, within GFF1321at 658.363 kb on + strand, within GFF1321at 658.363 kb on + strand, within GFF1321at 658.363 kb on + strand, within GFF1321at 658.364 kb on - strand, within GFF1321at 658.403 kb on + strand, within GFF1321at 658.403 kb on + strand, within GFF1321at 658.403 kb on + strand, within GFF1321at 658.403 kb on + strand, within GFF1321at 658.403 kb on + strand, within GFF1321at 658.404 kb on - strand, within GFF1321at 658.404 kb on - strand, within GFF1321at 658.525 kb on + strandat 658.525 kb on + strandat 658.526 kb on - strandat 658.781 kb on + strandat 658.781 kb on + strandat 658.781 kb on + strandat 658.781 kb on + strandat 658.782 kb on - strandat 658.782 kb on - strandat 658.782 kb on - strandat 658.982 kb on + strand, within GFF1322at 658.982 kb on + strand, within GFF1322at 658.983 kb on - strand, within GFF1322at 659.031 kb on - strand, within GFF1322at 659.132 kb on + strand, within GFF1322at 659.132 kb on + strand, within GFF1322at 659.133 kb on - strand, within GFF1322at 659.133 kb on - strand, within GFF1322at 659.133 kb on - strand, within GFF1322at 659.285 kb on + strand, within GFF1322at 659.285 kb on + strand, within GFF1322at 659.285 kb on + strand, within GFF1322at 659.285 kb on + strand, within GFF1322at 659.285 kb on + strand, within GFF1322at 659.286 kb on - strand, within GFF1322at 659.286 kb on - strand, within GFF1322at 659.286 kb on - strand, within GFF1322at 659.429 kb on + strand, within GFF1322at 659.429 kb on + strand, within GFF1322at 659.429 kb on + strand, within GFF1322at 659.429 kb on + strand, within GFF1322at 659.429 kb on + strand, within GFF1322at 659.430 kb on - strand, within GFF1322at 659.435 kb on + strand, within GFF1322at 659.435 kb on + strand, within GFF1322at 659.436 kb on - strand, within GFF1322at 659.516 kb on + strand, within GFF1322at 659.516 kb on + strand, within GFF1322at 659.516 kb on + strand, within GFF1322at 659.516 kb on + strand, within GFF1322at 659.517 kb on - strand, within GFF1322at 659.517 kb on - strand, within GFF1322at 659.517 kb on - strand, within GFF1322at 659.517 kb on - strand, within GFF1322at 659.517 kb on - strand, within GFF1322at 659.517 kb on - strand, within GFF1322

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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656,939 + GFF1320 0.74 +0.3
656,939 + GFF1320 0.74 +1.6
656,939 + GFF1320 0.74 -0.4
656,939 + GFF1320 0.74 -0.7
656,939 + GFF1320 0.74 +0.7
656,939 + GFF1320 0.74 +0.5
656,939 + GFF1320 0.74 -0.2
656,940 - GFF1320 0.74 -0.3
656,940 - GFF1320 0.74 -0.5
656,940 - GFF1320 0.74 -0.7
656,940 - GFF1320 0.74 +0.3
656,940 - GFF1320 0.74 -0.5
656,940 - GFF1320 0.74 +0.7
656,940 - GFF1320 0.74 -0.1
656,940 - GFF1320 0.74 -0.2
656,940 - GFF1320 0.74 +1.0
656,940 - GFF1320 0.74 +0.3
656,940 - GFF1320 0.74 -0.5
656,940 - GFF1320 0.74 -0.6
657,056 + GFF1320 0.80 -1.8
657,056 + GFF1320 0.80 -1.3
657,091 + GFF1320 0.81 -0.2
657,091 + GFF1320 0.81 -1.3
657,092 - GFF1320 0.81 -0.3
657,143 + GFF1320 0.84 -0.5
657,143 + GFF1320 0.84 +0.8
657,143 + GFF1320 0.84 +0.6
657,143 + GFF1320 0.84 -2.4
657,143 + GFF1320 0.84 -0.2
657,143 + GFF1320 0.84 +0.5
657,143 + GFF1320 0.84 -0.9
657,143 + GFF1320 0.84 +0.2
657,144 - GFF1320 0.84 -0.1
657,144 - GFF1320 0.84 -1.1
657,144 - GFF1320 0.84 -0.8
657,144 - GFF1320 0.84 -0.4
657,144 - GFF1320 0.84 -0.2
657,277 - -0.6
657,460 + +0.0
657,460 + +0.3
657,460 + -0.3
657,461 - +0.6
657,461 - +0.9
657,461 - +0.2
657,461 - +0.0
657,475 - +0.0
657,539 + -1.7
657,539 + -0.3
657,539 + -0.3
657,539 + +0.3
657,539 + +0.6
657,539 + +1.3
657,539 + -0.3
657,539 + -0.0
657,539 + -0.5
657,539 + -0.5
657,539 + -0.3
657,539 + -0.4
657,539 + -0.0
657,539 + -0.4
657,539 + -0.3
657,539 + -0.6
657,539 + +0.3
657,539 + -0.3
657,539 + -0.8
657,539 + -0.5
657,539 + -0.4
657,539 + -0.7
657,539 + -1.0
657,539 + +0.1
657,539 + +0.2
657,540 - +0.7
657,540 - -0.5
657,540 - -1.0
657,540 - +0.3
657,540 - +2.7
657,540 - -0.2
657,540 - +0.3
657,540 - -0.8
657,540 - -0.1
657,540 - +0.0
657,540 - -1.0
657,540 - -0.9
657,540 - +0.2
657,540 - -0.6
657,540 - +0.2
657,540 - -0.4
657,540 - +0.8
657,540 - +0.2
657,540 - -0.7
657,540 - +0.1
657,540 - -0.5
657,540 - -1.3
657,540 - -1.4
657,540 - +0.4
657,540 - -1.0
657,540 - +0.6
657,627 - GFF1321 0.14 -0.0
657,627 - GFF1321 0.14 -0.7
657,669 + GFF1321 0.18 -0.4
657,669 + GFF1321 0.18 +0.1
657,670 - GFF1321 0.18 -0.3
657,670 - GFF1321 0.18 -0.7
657,670 - GFF1321 0.18 -0.6
657,670 - GFF1321 0.18 -0.5
658,004 + GFF1321 0.50 -0.0
658,004 + GFF1321 0.50 -0.4
658,004 + GFF1321 0.50 +0.1
658,004 + GFF1321 0.50 +0.1
658,005 - GFF1321 0.50 -0.4
658,005 - GFF1321 0.50 -0.1
658,005 - GFF1321 0.50 +0.7
658,196 + GFF1321 0.69 -0.1
658,196 + GFF1321 0.69 +0.4
658,196 + GFF1321 0.69 -0.4
658,196 + GFF1321 0.69 +0.1
658,196 + GFF1321 0.69 +0.2
658,196 + GFF1321 0.69 -1.3
658,196 + GFF1321 0.69 -0.3
658,196 + GFF1321 0.69 +0.1
658,196 + GFF1321 0.69 -0.1
658,197 - GFF1321 0.69 -0.5
658,197 - GFF1321 0.69 -0.8
658,197 - GFF1321 0.69 -2.4
658,197 - GFF1321 0.69 -0.4
658,197 - GFF1321 0.69 -0.1
658,197 - GFF1321 0.69 +1.3
658,197 - GFF1321 0.69 +0.7
658,197 - GFF1321 0.69 +0.3
658,363 + GFF1321 0.85 -0.7
658,363 + GFF1321 0.85 -0.6
658,363 + GFF1321 0.85 -0.3
658,364 - GFF1321 0.85 +0.3
658,403 + GFF1321 0.89 +1.0
658,403 + GFF1321 0.89 -0.1
658,403 + GFF1321 0.89 +0.3
658,403 + GFF1321 0.89 +0.3
658,403 + GFF1321 0.89 -0.5
658,404 - GFF1321 0.89 +0.9
658,404 - GFF1321 0.89 +1.1
658,525 + -0.4
658,525 + -1.0
658,526 - -1.5
658,781 + -0.5
658,781 + -1.0
658,781 + -1.5
658,781 + +0.5
658,782 - -0.3
658,782 - -0.3
658,782 - -0.3
658,982 + GFF1322 0.14 -0.3
658,982 + GFF1322 0.14 +0.1
658,983 - GFF1322 0.14 -1.1
659,031 - GFF1322 0.16 -0.3
659,132 + GFF1322 0.20 -0.3
659,132 + GFF1322 0.20 +0.3
659,133 - GFF1322 0.20 +2.3
659,133 - GFF1322 0.20 -1.8
659,133 - GFF1322 0.20 -1.1
659,285 + GFF1322 0.26 +1.0
659,285 + GFF1322 0.26 -1.4
659,285 + GFF1322 0.26 +0.7
659,285 + GFF1322 0.26 -0.8
659,285 + GFF1322 0.26 +0.8
659,286 - GFF1322 0.26 +1.7
659,286 - GFF1322 0.26 -1.1
659,286 - GFF1322 0.26 -1.1
659,429 + GFF1322 0.31 +0.5
659,429 + GFF1322 0.31 -0.8
659,429 + GFF1322 0.31 -0.7
659,429 + GFF1322 0.31 -1.1
659,429 + GFF1322 0.31 -0.7
659,430 - GFF1322 0.31 -0.1
659,435 + GFF1322 0.32 -0.4
659,435 + GFF1322 0.32 -0.4
659,436 - GFF1322 0.32 -1.0
659,516 + GFF1322 0.35 -0.3
659,516 + GFF1322 0.35 -1.8
659,516 + GFF1322 0.35 -1.1
659,516 + GFF1322 0.35 +0.3
659,517 - GFF1322 0.35 -0.3
659,517 - GFF1322 0.35 -1.7
659,517 - GFF1322 0.35 -0.7
659,517 - GFF1322 0.35 +1.0
659,517 - GFF1322 0.35 -0.5
659,517 - GFF1322 0.35 +0.0

Or see this region's nucleotide sequence