Strain Fitness in Variovorax sp. SCN45 around GFF1136

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1133 and GFF1134 are separated by 17 nucleotidesGFF1134 and GFF1135 overlap by 14 nucleotidesGFF1135 and GFF1136 are separated by 235 nucleotidesGFF1136 and GFF1137 are separated by 4 nucleotidesGFF1137 and GFF1138 are separated by 129 nucleotides GFF1133 - FIG00431745: hypothetical protein, at 450,305 to 451,222 GFF1133 GFF1134 - FIG00931167: hypothetical protein, at 451,240 to 451,611 GFF1134 GFF1135 - hypothetical protein, at 451,598 to 451,828 GFF1135 GFF1136 - hypothetical protein, at 452,064 to 452,651 GFF1136 GFF1137 - FIG00348850: hypothetical protein, at 452,656 to 453,498 GFF1137 GFF1138 - Transcriptional regulator, AcrR family, at 453,628 to 454,257 GFF1138 Position (kb) 452 453Strain fitness (log2 ratio) -2 -1 0 1 2at 451.203 kb on - strandat 451.203 kb on - strandat 451.203 kb on - strandat 451.203 kb on - strandat 451.203 kb on - strandat 451.220 kb on + strandat 451.220 kb on + strandat 451.220 kb on + strandat 451.220 kb on + strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.221 kb on - strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.226 kb on + strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.227 kb on - strandat 451.360 kb on + strand, within GFF1134at 451.360 kb on + strand, within GFF1134at 451.361 kb on - strand, within GFF1134at 451.361 kb on - strand, within GFF1134at 451.361 kb on - strand, within GFF1134at 451.441 kb on + strand, within GFF1134at 451.462 kb on + strand, within GFF1134at 451.462 kb on + strand, within GFF1134at 451.463 kb on - strand, within GFF1134at 451.463 kb on - strand, within GFF1134at 451.463 kb on - strand, within GFF1134at 451.463 kb on - strand, within GFF1134at 451.470 kb on + strand, within GFF1134at 451.471 kb on - strand, within GFF1134at 451.471 kb on - strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.477 kb on + strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.478 kb on - strand, within GFF1134at 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.614 kb on + strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.615 kb on - strandat 451.646 kb on + strand, within GFF1135at 451.646 kb on + strand, within GFF1135at 451.646 kb on + strand, within GFF1135at 451.646 kb on + strand, within GFF1135at 451.647 kb on - strand, within GFF1135at 451.647 kb on - strand, within GFF1135at 451.809 kb on + strandat 451.810 kb on - strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.848 kb on + strandat 451.928 kb on - strandat 451.929 kb on + strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.945 kb on + strandat 451.945 kb on + strandat 451.945 kb on + strandat 451.946 kb on - strandat 451.954 kb on + strandat 451.954 kb on + strandat 451.954 kb on + strandat 451.955 kb on - strandat 451.955 kb on - strandat 451.955 kb on - strandat 451.964 kb on + strandat 451.964 kb on - strandat 451.965 kb on - strandat 451.977 kb on + strandat 452.040 kb on - strandat 452.069 kb on + strandat 452.069 kb on + strandat 452.069 kb on + strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.197 kb on + strand, within GFF1136at 452.197 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.761 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 453.305 kb on + strand, within GFF1137at 453.503 kb on + strandat 453.518 kb on + strandat 453.518 kb on + strandat 453.546 kb on + strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.600 kb on + strandat 453.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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451,203 - -0.9
451,203 - -1.0
451,203 - +0.1
451,203 - -0.6
451,203 - -0.5
451,220 + +0.2
451,220 + -0.2
451,220 + -0.5
451,220 + -0.3
451,221 - -1.9
451,221 - -0.6
451,221 - +0.1
451,221 - +0.2
451,221 - -0.1
451,221 - +0.7
451,221 - +1.4
451,221 - -0.3
451,226 + -0.9
451,226 + +0.4
451,226 + +0.5
451,226 + -0.5
451,226 + -0.0
451,226 + -0.1
451,226 + -0.5
451,226 + +0.1
451,226 + -0.5
451,226 + -0.2
451,226 + -0.2
451,226 + +0.1
451,226 + -0.3
451,226 + +0.4
451,226 + -0.1
451,226 + +0.9
451,226 + +2.0
451,226 + -1.2
451,226 + -0.3
451,226 + -0.1
451,226 + +0.0
451,226 + -0.4
451,226 + -0.4
451,226 + -0.8
451,227 - +0.6
451,227 - -1.2
451,227 - +0.2
451,227 - +1.4
451,227 - +0.6
451,227 - +1.1
451,227 - +0.1
451,227 - +0.5
451,227 - -1.1
451,227 - +0.2
451,227 - +0.2
451,227 - -0.4
451,227 - -0.0
451,227 - +0.6
451,227 - -0.6
451,227 - +0.9
451,227 - +0.7
451,227 - +0.1
451,227 - -0.2
451,227 - +1.2
451,227 - -0.5
451,227 - -0.5
451,360 + GFF1134 0.32 -1.7
451,360 + GFF1134 0.32 -1.2
451,361 - GFF1134 0.33 -0.3
451,361 - GFF1134 0.33 +0.2
451,361 - GFF1134 0.33 +0.5
451,441 + GFF1134 0.54 -0.4
451,462 + GFF1134 0.60 -0.3
451,462 + GFF1134 0.60 +0.2
451,463 - GFF1134 0.60 -0.2
451,463 - GFF1134 0.60 -0.6
451,463 - GFF1134 0.60 -0.6
451,463 - GFF1134 0.60 -0.2
451,470 + GFF1134 0.62 +0.4
451,471 - GFF1134 0.62 -0.1
451,471 - GFF1134 0.62 -0.4
451,477 + GFF1134 0.64 -0.2
451,477 + GFF1134 0.64 +0.3
451,477 + GFF1134 0.64 +0.2
451,477 + GFF1134 0.64 +0.2
451,477 + GFF1134 0.64 -0.9
451,477 + GFF1134 0.64 +0.8
451,477 + GFF1134 0.64 +0.4
451,477 + GFF1134 0.64 -0.6
451,477 + GFF1134 0.64 -1.8
451,477 + GFF1134 0.64 -1.4
451,477 + GFF1134 0.64 +0.4
451,477 + GFF1134 0.64 +0.3
451,477 + GFF1134 0.64 -1.1
451,478 - GFF1134 0.64 +0.6
451,478 - GFF1134 0.64 -0.4
451,478 - GFF1134 0.64 +0.2
451,478 - GFF1134 0.64 +0.2
451,478 - GFF1134 0.64 -0.5
451,478 - GFF1134 0.64 +1.0
451,478 - GFF1134 0.64 -0.9
451,478 - GFF1134 0.64 +0.4
451,478 - GFF1134 0.64 +0.0
451,478 - GFF1134 0.64 +0.6
451,478 - GFF1134 0.64 -0.2
451,614 + -0.3
451,614 + +0.0
451,614 + -1.2
451,614 + -1.2
451,614 + +0.8
451,614 + +0.3
451,614 + -0.4
451,614 + -0.2
451,614 + +0.4
451,614 + +0.2
451,614 + -0.4
451,614 + -0.9
451,614 + +0.1
451,614 + +0.2
451,615 - -1.5
451,615 - -0.2
451,615 - -0.3
451,615 - -0.2
451,615 - -0.1
451,615 - -0.7
451,615 - -0.4
451,615 - +0.4
451,646 + GFF1135 0.21 -0.2
451,646 + GFF1135 0.21 -1.2
451,646 + GFF1135 0.21 -0.3
451,646 + GFF1135 0.21 -0.6
451,647 - GFF1135 0.21 -0.4
451,647 - GFF1135 0.21 -0.5
451,809 + -0.2
451,810 - +0.3
451,826 + -0.4
451,826 + -0.7
451,826 + -1.6
451,826 + +1.4
451,826 + -1.1
451,827 - +0.8
451,827 - +1.5
451,827 - +0.0
451,827 - -1.0
451,827 - -0.5
451,827 - +0.7
451,827 - +1.0
451,827 - -1.2
451,827 - +0.3
451,848 + -0.0
451,928 - -2.2
451,929 + -0.6
451,930 - -2.1
451,930 - -1.0
451,930 - +1.4
451,930 - -0.6
451,930 - -0.2
451,930 - -0.7
451,945 + -0.5
451,945 + -0.0
451,945 + -0.5
451,946 - +1.0
451,954 + -0.5
451,954 + -0.4
451,954 + +0.4
451,955 - +1.0
451,955 - -0.5
451,955 - -1.6
451,964 + +0.4
451,964 - +0.4
451,965 - +0.2
451,977 + -0.4
452,040 - -1.1
452,069 + -0.7
452,069 + +0.1
452,069 + -0.2
452,070 - -1.3
452,070 - -0.4
452,070 - +0.8
452,070 - -0.9
452,197 + GFF1136 0.23 -0.2
452,197 + GFF1136 0.23 -0.0
452,388 + GFF1136 0.55 -1.0
452,388 + GFF1136 0.55 +0.1
452,388 + GFF1136 0.55 +0.2
452,388 + GFF1136 0.55 +0.0
452,388 + GFF1136 0.55 -0.6
452,388 + GFF1136 0.55 -0.7
452,388 + GFF1136 0.55 +0.5
452,388 + GFF1136 0.55 +0.1
452,389 - GFF1136 0.55 +0.6
452,389 - GFF1136 0.55 +0.1
452,389 - GFF1136 0.55 -0.4
452,389 - GFF1136 0.55 -0.5
452,389 - GFF1136 0.55 -0.4
452,389 - GFF1136 0.55 +0.2
452,389 - GFF1136 0.55 -0.0
452,389 - GFF1136 0.55 -0.3
452,399 + GFF1136 0.57 -0.9
452,399 + GFF1136 0.57 -0.6
452,399 + GFF1136 0.57 -0.4
452,399 + GFF1136 0.57 -0.5
452,399 + GFF1136 0.57 +0.1
452,399 + GFF1136 0.57 +1.6
452,400 - GFF1136 0.57 -0.4
452,400 - GFF1136 0.57 +0.0
452,400 - GFF1136 0.57 -0.5
452,400 - GFF1136 0.57 +0.4
452,451 + GFF1136 0.66 -0.2
452,451 + GFF1136 0.66 +0.6
452,451 + GFF1136 0.66 +0.2
452,451 + GFF1136 0.66 -0.3
452,451 + GFF1136 0.66 +1.4
452,451 + GFF1136 0.66 -0.4
452,451 + GFF1136 0.66 +0.3
452,451 + GFF1136 0.66 -0.0
452,451 + GFF1136 0.66 +0.9
452,451 + GFF1136 0.66 +0.8
452,451 + GFF1136 0.66 -0.8
452,452 - GFF1136 0.66 -0.3
452,452 - GFF1136 0.66 +0.2
452,452 - GFF1136 0.66 -0.5
452,452 - GFF1136 0.66 -0.9
452,452 - GFF1136 0.66 +0.1
452,452 - GFF1136 0.66 -0.3
452,452 - GFF1136 0.66 -1.2
452,452 - GFF1136 0.66 +1.7
452,452 - GFF1136 0.66 -0.0
452,452 - GFF1136 0.66 -0.5
452,452 - GFF1136 0.66 -0.8
452,452 - GFF1136 0.66 +0.1
452,452 - GFF1136 0.66 +0.0
452,452 - GFF1136 0.66 +0.1
452,452 - GFF1136 0.66 -0.3
452,452 - GFF1136 0.66 -1.9
452,452 - GFF1136 0.66 -1.4
452,699 + -0.3
452,699 + -0.2
452,699 + -0.0
452,699 + +0.5
452,699 + -0.7
452,699 + +0.7
452,699 + -0.9
452,699 + -1.0
452,700 - -0.3
452,700 - -0.8
452,700 - -1.4
452,700 - -0.8
452,700 - -0.4
452,700 - -1.8
452,700 - -0.1
452,700 - -1.8
452,761 + GFF1137 0.12 -0.1
452,777 + GFF1137 0.14 +0.4
452,777 + GFF1137 0.14 +0.2
452,777 + GFF1137 0.14 -0.3
452,777 + GFF1137 0.14 -2.6
452,777 + GFF1137 0.14 -1.1
452,777 + GFF1137 0.14 -0.3
452,778 - GFF1137 0.14 +0.1
452,778 - GFF1137 0.14 -0.5
452,778 - GFF1137 0.14 +0.5
452,984 + GFF1137 0.39 -0.2
452,984 + GFF1137 0.39 +0.0
452,984 + GFF1137 0.39 -0.9
452,984 + GFF1137 0.39 -1.3
452,984 + GFF1137 0.39 -0.7
452,984 + GFF1137 0.39 +0.5
452,984 + GFF1137 0.39 +0.5
452,984 + GFF1137 0.39 +0.1
452,984 + GFF1137 0.39 +0.8
452,984 + GFF1137 0.39 -0.8
452,984 + GFF1137 0.39 -0.7
452,984 + GFF1137 0.39 +1.0
452,984 + GFF1137 0.39 +0.2
452,984 + GFF1137 0.39 -0.4
452,984 + GFF1137 0.39 -1.5
452,984 + GFF1137 0.39 +1.4
452,984 + GFF1137 0.39 -0.2
452,984 + GFF1137 0.39 +0.1
452,984 + GFF1137 0.39 -0.3
452,984 + GFF1137 0.39 -0.3
452,984 + GFF1137 0.39 -0.1
452,984 + GFF1137 0.39 -0.2
452,984 + GFF1137 0.39 -1.6
452,984 + GFF1137 0.39 -1.2
452,985 - GFF1137 0.39 -0.4
452,985 - GFF1137 0.39 +0.2
452,985 - GFF1137 0.39 -0.3
452,985 - GFF1137 0.39 -0.3
452,985 - GFF1137 0.39 -0.4
452,985 - GFF1137 0.39 -0.5
452,985 - GFF1137 0.39 -0.7
452,985 - GFF1137 0.39 -1.3
452,985 - GFF1137 0.39 -0.3
452,985 - GFF1137 0.39 +0.9
452,985 - GFF1137 0.39 +0.3
452,985 - GFF1137 0.39 -1.2
452,985 - GFF1137 0.39 -1.2
452,985 - GFF1137 0.39 -0.9
452,985 - GFF1137 0.39 +0.2
452,985 - GFF1137 0.39 -0.3
452,985 - GFF1137 0.39 -0.9
453,305 + GFF1137 0.77 +0.4
453,503 + -0.2
453,518 + -1.5
453,518 + +0.4
453,546 + -1.4
453,547 - +0.8
453,547 - -0.3
453,547 - -0.3
453,547 - -0.3
453,547 - +0.0
453,547 - -0.3
453,600 + -0.7
453,611 - -0.2

Or see this region's nucleotide sequence