Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1112 and GFF1113 are separated by 55 nucleotides GFF1113 and GFF1114 overlap by 1 nucleotides GFF1114 and GFF1115 are separated by 75 nucleotides
GFF1112 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 428,970 to 430,007
GFF1112
GFF1113 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,063 to 430,878
GFF1113
GFF1114 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,878 to 431,720
GFF1114
GFF1115 - Putative transmembrane protein, at 431,796 to 432,980
GFF1115
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.961 kb on - strand at 429.961 kb on - strand at 430.135 kb on + strand at 430.135 kb on + strand at 430.135 kb on + strand at 430.315 kb on + strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.849 kb on + strand at 430.849 kb on + strand at 430.850 kb on - strand at 430.850 kb on - strand at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.361 kb on + strand, within GFF1114 at 431.361 kb on + strand, within GFF1114 at 431.362 kb on - strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.533 kb on - strand, within GFF1114 at 431.533 kb on - strand, within GFF1114 at 431.559 kb on + strand, within GFF1114 at 431.718 kb on + strand at 431.718 kb on + strand at 431.718 kb on + strand at 431.718 kb on + strand at 431.719 kb on - strand at 431.719 kb on - strand at 431.719 kb on - strand at 431.790 kb on + strand at 431.887 kb on - strand at 431.916 kb on + strand, within GFF1115 at 431.916 kb on + strand, within GFF1115 at 431.917 kb on - strand, within GFF1115 at 431.917 kb on - strand, within GFF1115 at 431.994 kb on + strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 432.324 kb on + strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.640 kb on - strand, within GFF1115
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 429,960 + -1.1 429,960 + -0.5 429,960 + -1.2 429,960 + +0.7 429,960 + -0.2 429,961 - -0.8 429,961 - -0.3 430,135 + +1.4 430,135 + -1.2 430,135 + +3.0 430,315 + GFF1113 0.31 +0.8 430,316 - GFF1113 0.31 +0.1 430,316 - GFF1113 0.31 -1.4 430,316 - GFF1113 0.31 -0.2 430,316 - GFF1113 0.31 -0.5 430,849 + +0.8 430,849 + -0.6 430,850 - +0.1 430,850 - +0.2 431,106 + GFF1114 0.27 +2.4 431,106 + GFF1114 0.27 -0.7 431,106 + GFF1114 0.27 -1.3 431,106 + GFF1114 0.27 -0.9 431,106 + GFF1114 0.27 +0.1 431,106 + GFF1114 0.27 -0.4 431,106 + GFF1114 0.27 +0.6 431,106 + GFF1114 0.27 -0.1 431,107 - GFF1114 0.27 -0.7 431,107 - GFF1114 0.27 +0.8 431,107 - GFF1114 0.27 +0.6 431,229 + GFF1114 0.42 -0.4 431,229 + GFF1114 0.42 -0.1 431,229 + GFF1114 0.42 +1.0 431,230 - GFF1114 0.42 +0.1 431,230 - GFF1114 0.42 -0.0 431,230 - GFF1114 0.42 -0.4 431,230 - GFF1114 0.42 -0.1 431,361 + GFF1114 0.57 -0.8 431,361 + GFF1114 0.57 +0.5 431,362 - GFF1114 0.57 +0.1 431,448 + GFF1114 0.68 +0.2 431,448 + GFF1114 0.68 +0.1 431,448 + GFF1114 0.68 +1.4 431,449 - GFF1114 0.68 +0.8 431,449 - GFF1114 0.68 +0.0 431,449 - GFF1114 0.68 -0.7 431,533 - GFF1114 0.78 +0.6 431,533 - GFF1114 0.78 -1.3 431,559 + GFF1114 0.81 +0.4 431,718 + -1.0 431,718 + -0.3 431,718 + -0.1 431,718 + -0.2 431,719 - -0.2 431,719 - +1.4 431,719 - -0.7 431,790 + -1.5 431,887 - +0.9 431,916 + GFF1115 0.10 -0.3 431,916 + GFF1115 0.10 -1.2 431,917 - GFF1115 0.10 -0.5 431,917 - GFF1115 0.10 +0.2 431,994 + GFF1115 0.17 -0.4 431,995 - GFF1115 0.17 +0.5 431,995 - GFF1115 0.17 -0.9 431,995 - GFF1115 0.17 +1.4 431,995 - GFF1115 0.17 +0.4 431,995 - GFF1115 0.17 +0.0 432,324 + GFF1115 0.45 +0.3 432,325 - GFF1115 0.45 -0.5 432,325 - GFF1115 0.45 -1.4 432,558 + GFF1115 0.64 -1.8 432,558 + GFF1115 0.64 +0.6 432,558 + GFF1115 0.64 +1.7 432,559 - GFF1115 0.64 -0.1 432,559 - GFF1115 0.64 -0.4 432,559 - GFF1115 0.64 -0.4 432,639 + GFF1115 0.71 +1.4 432,639 + GFF1115 0.71 -1.0 432,639 + GFF1115 0.71 -0.4 432,639 + GFF1115 0.71 -0.5 432,640 - GFF1115 0.71 +0.4
Or see this region's nucleotide sequence