Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1039 and GFF1040 are separated by 170 nucleotides GFF1040 and GFF1041 are separated by 18 nucleotides GFF1041 and GFF1043 overlap by 4 nucleotides GFF1043 and GFF1042 overlap by 2 nucleotides
GFF1039 - Far-related protein, at 356,290 to 357,171
GFF1039
GFF1040 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 357,342 to 358,244
GFF1040
GFF1041 - Transcriptional regulator, AsnC family, at 358,263 to 358,721
GFF1041
GFF1043 - no description, at 358,718 to 358,846
GFF1043
GFF1042 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 358,845 to 359,453
GFF1042
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.498 kb on + strand, within GFF1039 at 356.498 kb on + strand, within GFF1039 at 356.498 kb on + strand, within GFF1039 at 356.499 kb on - strand, within GFF1039 at 356.527 kb on + strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.609 kb on + strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.693 kb on + strand, within GFF1039 at 356.694 kb on - strand, within GFF1039 at 356.694 kb on - strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.964 kb on - strand, within GFF1039 at 356.987 kb on + strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.295 kb on - strand at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.712 kb on - strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.156 kb on - strand at 358.156 kb on - strand at 358.251 kb on - strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.480 kb on + strand, within GFF1041 at 358.480 kb on + strand, within GFF1041 at 358.481 kb on - strand, within GFF1041 at 358.567 kb on + strand, within GFF1041 at 358.567 kb on + strand, within GFF1041 at 358.813 kb on + strand, within GFF1043 at 359.166 kb on + strand, within GFF1042 at 359.166 kb on + strand, within GFF1042 at 359.166 kb on + strand, within GFF1042 at 359.167 kb on - strand, within GFF1042 at 359.244 kb on + strand, within GFF1042
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 356,498 + GFF1039 0.24 -0.2 356,498 + GFF1039 0.24 +1.4 356,498 + GFF1039 0.24 -0.2 356,499 - GFF1039 0.24 -0.8 356,527 + GFF1039 0.27 +0.7 356,528 - GFF1039 0.27 +0.2 356,528 - GFF1039 0.27 -0.6 356,528 - GFF1039 0.27 -1.1 356,528 - GFF1039 0.27 +0.1 356,609 + GFF1039 0.36 -0.5 356,610 - GFF1039 0.36 +1.0 356,610 - GFF1039 0.36 -0.5 356,610 - GFF1039 0.36 -0.6 356,693 + GFF1039 0.46 -0.2 356,694 - GFF1039 0.46 -1.2 356,694 - GFF1039 0.46 -0.6 356,744 + GFF1039 0.51 -0.3 356,744 + GFF1039 0.51 -0.8 356,744 + GFF1039 0.51 -0.4 356,744 + GFF1039 0.51 -0.6 356,744 + GFF1039 0.51 -0.3 356,744 + GFF1039 0.51 -0.6 356,744 + GFF1039 0.51 -0.2 356,744 + GFF1039 0.51 +0.2 356,744 + GFF1039 0.51 -1.7 356,745 - GFF1039 0.52 -0.5 356,745 - GFF1039 0.52 -0.2 356,745 - GFF1039 0.52 -0.2 356,745 - GFF1039 0.52 -1.3 356,964 - GFF1039 0.76 +0.4 356,987 + GFF1039 0.79 +0.2 356,988 - GFF1039 0.79 -0.2 356,988 - GFF1039 0.79 +0.2 356,988 - GFF1039 0.79 -1.8 357,002 + GFF1039 0.81 -0.0 357,002 + GFF1039 0.81 -1.0 357,002 + GFF1039 0.81 +0.1 357,002 + GFF1039 0.81 -0.2 357,002 + GFF1039 0.81 +0.5 357,003 - GFF1039 0.81 -1.2 357,003 - GFF1039 0.81 +0.1 357,003 - GFF1039 0.81 +0.5 357,003 - GFF1039 0.81 -0.6 357,003 - GFF1039 0.81 +0.2 357,003 - GFF1039 0.81 -0.2 357,003 - GFF1039 0.81 -0.5 357,003 - GFF1039 0.81 -0.5 357,003 - GFF1039 0.81 +0.4 357,003 - GFF1039 0.81 -0.0 357,270 + +1.4 357,270 + +1.4 357,270 + -1.1 357,270 + +0.4 357,271 - -0.1 357,271 - +0.8 357,271 - -0.3 357,271 - -0.1 357,271 - -1.1 357,295 - +0.1 357,711 + GFF1040 0.41 -2.3 357,711 + GFF1040 0.41 -0.7 357,711 + GFF1040 0.41 -0.3 357,711 + GFF1040 0.41 -0.0 357,711 + GFF1040 0.41 -0.8 357,711 + GFF1040 0.41 +0.4 357,712 - GFF1040 0.41 -1.4 357,834 + GFF1040 0.54 +0.4 357,834 + GFF1040 0.54 -0.5 357,834 + GFF1040 0.54 -1.8 357,834 + GFF1040 0.54 +1.4 357,834 + GFF1040 0.54 +0.2 357,834 + GFF1040 0.54 -0.4 357,835 - GFF1040 0.55 +1.1 357,835 - GFF1040 0.55 -0.2 357,835 - GFF1040 0.55 +1.4 357,835 - GFF1040 0.55 -0.6 357,835 - GFF1040 0.55 -0.6 357,835 - GFF1040 0.55 -0.8 358,155 + -0.1 358,155 + -0.0 358,155 + -0.5 358,155 + +1.0 358,156 - -1.3 358,156 - -1.1 358,251 - +1.4 358,264 + +0.5 358,264 + -0.1 358,264 + +1.0 358,264 + -0.2 358,265 - -0.0 358,265 - +0.8 358,265 - -0.3 358,265 - -1.2 358,480 + GFF1041 0.47 +0.2 358,480 + GFF1041 0.47 -0.4 358,481 - GFF1041 0.47 +2.0 358,567 + GFF1041 0.66 +0.4 358,567 + GFF1041 0.66 -1.0 358,813 + GFF1043 0.74 +0.5 359,166 + GFF1042 0.53 +0.2 359,166 + GFF1042 0.53 +0.0 359,166 + GFF1042 0.53 -1.1 359,167 - GFF1042 0.53 -0.3 359,244 + GFF1042 0.66 +0.9
Or see this region's nucleotide sequence