Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14455

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14450 and A4249_RS14455 are separated by 205 nucleotidesA4249_RS14455 and A4249_RS14460 are separated by 58 nucleotidesA4249_RS14460 and A4249_RS14465 are separated by 33 nucleotides A4249_RS14450: A4249_RS14450 - peptide chain release factor 1, at 2,923,866 to 2,924,933 _RS14450 A4249_RS14455: A4249_RS14455 - response regulator, at 2,925,139 to 2,925,744 _RS14455 A4249_RS14460: A4249_RS14460 - Rrf2 family transcriptional regulator, at 2,925,803 to 2,926,243 _RS14460 A4249_RS14465: A4249_RS14465 - sulfite exporter TauE/SafE family protein, at 2,926,277 to 2,927,053 _RS14465 Position (kb) 2925 2926Strain fitness (log2 ratio) -2 -1 0 1 2at 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.106 kb on + strandat 2925.107 kb on - strandat 2925.107 kb on - strandat 2925.107 kb on - strandat 2925.126 kb on + strandat 2925.214 kb on + strand, within A4249_RS14455at 2925.214 kb on + strand, within A4249_RS14455at 2925.215 kb on - strand, within A4249_RS14455at 2925.215 kb on - strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.292 kb on + strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.293 kb on - strand, within A4249_RS14455at 2925.700 kb on + strandat 2925.700 kb on + strandat 2925.700 kb on + strandat 2925.700 kb on + strandat 2925.701 kb on - strandat 2925.701 kb on - strandat 2925.701 kb on - strandat 2925.701 kb on - strandat 2925.702 kb on + strandat 2925.702 kb on + strandat 2926.349 kb on + strandat 2926.350 kb on - strandat 2926.350 kb on - strandat 2926.462 kb on + strand, within A4249_RS14465at 2926.462 kb on + strand, within A4249_RS14465at 2926.463 kb on - strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.592 kb on + strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465at 2926.593 kb on - strand, within A4249_RS14465

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,925,106 + +0.3
2,925,106 + -0.4
2,925,106 + -0.3
2,925,106 + +0.2
2,925,106 + -0.2
2,925,106 + -1.7
2,925,106 + -0.1
2,925,107 - -0.2
2,925,107 - -0.8
2,925,107 - -1.4
2,925,126 + +0.7
2,925,214 + A4249_RS14455 0.12 +0.1
2,925,214 + A4249_RS14455 0.12 +1.4
2,925,215 - A4249_RS14455 0.13 -0.7
2,925,215 - A4249_RS14455 0.13 -0.5
2,925,292 + A4249_RS14455 0.25 +1.7
2,925,292 + A4249_RS14455 0.25 -0.1
2,925,292 + A4249_RS14455 0.25 -0.2
2,925,292 + A4249_RS14455 0.25 -0.4
2,925,292 + A4249_RS14455 0.25 +0.2
2,925,292 + A4249_RS14455 0.25 +0.2
2,925,292 + A4249_RS14455 0.25 -0.4
2,925,293 - A4249_RS14455 0.25 -0.1
2,925,293 - A4249_RS14455 0.25 -1.1
2,925,293 - A4249_RS14455 0.25 +0.6
2,925,293 - A4249_RS14455 0.25 -0.7
2,925,293 - A4249_RS14455 0.25 -0.1
2,925,293 - A4249_RS14455 0.25 +0.8
2,925,700 + +0.1
2,925,700 + -0.2
2,925,700 + -0.2
2,925,700 + -0.0
2,925,701 - -0.4
2,925,701 - -0.9
2,925,701 - -0.2
2,925,701 - +0.4
2,925,702 + +0.9
2,925,702 + -0.2
2,926,349 + +1.8
2,926,350 - +0.6
2,926,350 - +0.9
2,926,462 + A4249_RS14465 0.24 +0.4
2,926,462 + A4249_RS14465 0.24 -0.2
2,926,463 - A4249_RS14465 0.24 -1.8
2,926,592 + A4249_RS14465 0.41 -0.0
2,926,592 + A4249_RS14465 0.41 -0.2
2,926,592 + A4249_RS14465 0.41 -0.3
2,926,592 + A4249_RS14465 0.41 -0.2
2,926,592 + A4249_RS14465 0.41 -0.2
2,926,592 + A4249_RS14465 0.41 -0.3
2,926,592 + A4249_RS14465 0.41 -0.2
2,926,592 + A4249_RS14465 0.41 -0.2
2,926,592 + A4249_RS14465 0.41 +0.6
2,926,592 + A4249_RS14465 0.41 +0.1
2,926,592 + A4249_RS14465 0.41 +0.7
2,926,593 - A4249_RS14465 0.41 +0.7
2,926,593 - A4249_RS14465 0.41 -0.1
2,926,593 - A4249_RS14465 0.41 -0.2
2,926,593 - A4249_RS14465 0.41 +0.2
2,926,593 - A4249_RS14465 0.41 +1.0
2,926,593 - A4249_RS14465 0.41 +0.1
2,926,593 - A4249_RS14465 0.41 -0.9
2,926,593 - A4249_RS14465 0.41 +0.4
2,926,593 - A4249_RS14465 0.41 -0.6
2,926,593 - A4249_RS14465 0.41 +0.3
2,926,593 - A4249_RS14465 0.41 +1.0
2,926,593 - A4249_RS14465 0.41 +0.5
2,926,593 - A4249_RS14465 0.41 -0.2

Or see this region's nucleotide sequence