Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13625

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13615 and A4249_RS13620 are separated by 57 nucleotidesA4249_RS13620 and A4249_RS13625 are separated by 52 nucleotidesA4249_RS13625 and A4249_RS13630 overlap by 38 nucleotidesA4249_RS13630 and A4249_RS13635 are separated by 290 nucleotides A4249_RS13615: A4249_RS13615 - Rrf2 family transcriptional regulator, at 2,752,325 to 2,752,804 _RS13615 A4249_RS13620: A4249_RS13620 - dienelactone hydrolase family protein, at 2,752,862 to 2,753,611 _RS13620 A4249_RS13625: A4249_RS13625 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 2,753,664 to 2,754,302 _RS13625 A4249_RS13630: A4249_RS13630 - hypothetical protein, at 2,754,265 to 2,754,633 _RS13630 A4249_RS13635: A4249_RS13635 - molecular chaperone DnaK, at 2,754,924 to 2,756,831 _RS13635 Position (kb) 2753 2754 2755Strain fitness (log2 ratio) -2 -1 0 1 2at 2753.047 kb on + strand, within A4249_RS13620at 2753.143 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.145 kb on + strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.146 kb on - strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.151 kb on + strand, within A4249_RS13620at 2753.152 kb on - strand, within A4249_RS13620at 2753.152 kb on - strand, within A4249_RS13620at 2753.152 kb on - strand, within A4249_RS13620at 2753.152 kb on - strand, within A4249_RS13620at 2753.358 kb on + strand, within A4249_RS13620at 2753.358 kb on + strand, within A4249_RS13620at 2753.358 kb on + strand, within A4249_RS13620at 2753.358 kb on + strand, within A4249_RS13620at 2753.478 kb on + strand, within A4249_RS13620at 2753.620 kb on + strandat 2753.621 kb on - strandat 2753.786 kb on + strand, within A4249_RS13625at 2753.786 kb on + strand, within A4249_RS13625at 2753.787 kb on - strand, within A4249_RS13625at 2753.787 kb on - strand, within A4249_RS13625at 2753.941 kb on + strand, within A4249_RS13625at 2753.941 kb on + strand, within A4249_RS13625at 2754.061 kb on + strand, within A4249_RS13625at 2754.061 kb on + strand, within A4249_RS13625at 2754.062 kb on - strand, within A4249_RS13625at 2754.154 kb on + strand, within A4249_RS13625at 2754.273 kb on + strandat 2754.274 kb on - strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.275 kb on + strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.276 kb on - strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.281 kb on + strandat 2754.282 kb on - strandat 2754.282 kb on - strandat 2754.356 kb on + strand, within A4249_RS13630at 2754.356 kb on + strand, within A4249_RS13630at 2754.357 kb on - strand, within A4249_RS13630at 2754.357 kb on - strand, within A4249_RS13630at 2754.357 kb on - strand, within A4249_RS13630at 2754.357 kb on - strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.360 kb on + strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.361 kb on - strand, within A4249_RS13630at 2754.470 kb on + strand, within A4249_RS13630at 2754.470 kb on + strand, within A4249_RS13630at 2754.471 kb on - strand, within A4249_RS13630at 2754.524 kb on + strand, within A4249_RS13630at 2754.524 kb on + strand, within A4249_RS13630at 2754.524 kb on + strand, within A4249_RS13630at 2754.524 kb on + strand, within A4249_RS13630at 2754.685 kb on + strandat 2754.685 kb on + strandat 2754.686 kb on - strandat 2754.686 kb on - strandat 2754.686 kb on - strandat 2754.750 kb on + strandat 2754.782 kb on + strandat 2754.782 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,753,047 + A4249_RS13620 0.25 -0.1
2,753,143 + A4249_RS13620 0.37 +0.3
2,753,145 + A4249_RS13620 0.38 +0.3
2,753,145 + A4249_RS13620 0.38 +1.8
2,753,145 + A4249_RS13620 0.38 -0.3
2,753,145 + A4249_RS13620 0.38 -2.6
2,753,145 + A4249_RS13620 0.38 +0.5
2,753,145 + A4249_RS13620 0.38 -2.0
2,753,145 + A4249_RS13620 0.38 -0.0
2,753,145 + A4249_RS13620 0.38 +1.0
2,753,145 + A4249_RS13620 0.38 -0.2
2,753,145 + A4249_RS13620 0.38 +0.4
2,753,146 - A4249_RS13620 0.38 +0.5
2,753,146 - A4249_RS13620 0.38 -1.5
2,753,146 - A4249_RS13620 0.38 +0.6
2,753,146 - A4249_RS13620 0.38 +0.2
2,753,146 - A4249_RS13620 0.38 -0.1
2,753,146 - A4249_RS13620 0.38 +0.1
2,753,146 - A4249_RS13620 0.38 -0.6
2,753,151 + A4249_RS13620 0.39 -1.3
2,753,151 + A4249_RS13620 0.39 -0.2
2,753,151 + A4249_RS13620 0.39 -1.0
2,753,151 + A4249_RS13620 0.39 +0.4
2,753,151 + A4249_RS13620 0.39 +0.3
2,753,151 + A4249_RS13620 0.39 -1.1
2,753,151 + A4249_RS13620 0.39 -0.2
2,753,151 + A4249_RS13620 0.39 -0.1
2,753,151 + A4249_RS13620 0.39 -1.3
2,753,152 - A4249_RS13620 0.39 -0.2
2,753,152 - A4249_RS13620 0.39 +0.5
2,753,152 - A4249_RS13620 0.39 -1.6
2,753,152 - A4249_RS13620 0.39 +0.5
2,753,358 + A4249_RS13620 0.66 -0.6
2,753,358 + A4249_RS13620 0.66 +0.8
2,753,358 + A4249_RS13620 0.66 -0.4
2,753,358 + A4249_RS13620 0.66 +0.7
2,753,478 + A4249_RS13620 0.82 +0.3
2,753,620 + -0.3
2,753,621 - -1.0
2,753,786 + A4249_RS13625 0.19 -0.8
2,753,786 + A4249_RS13625 0.19 -0.2
2,753,787 - A4249_RS13625 0.19 -0.1
2,753,787 - A4249_RS13625 0.19 +0.7
2,753,941 + A4249_RS13625 0.43 -2.1
2,753,941 + A4249_RS13625 0.43 -0.5
2,754,061 + A4249_RS13625 0.62 +0.3
2,754,061 + A4249_RS13625 0.62 -0.2
2,754,062 - A4249_RS13625 0.62 +0.9
2,754,154 + A4249_RS13625 0.77 +0.1
2,754,273 + -0.2
2,754,274 - -0.9
2,754,275 + +0.1
2,754,275 + -1.5
2,754,275 + -0.3
2,754,275 + -1.0
2,754,275 + +0.1
2,754,275 + +0.7
2,754,275 + +0.1
2,754,275 + -0.0
2,754,275 + +0.5
2,754,275 + -0.2
2,754,275 + +0.1
2,754,275 + -0.2
2,754,275 + -0.4
2,754,276 - -0.4
2,754,276 - -0.0
2,754,276 - +0.2
2,754,276 - -0.3
2,754,276 - +0.4
2,754,276 - +0.7
2,754,276 - -1.2
2,754,276 - +0.1
2,754,276 - +1.0
2,754,276 - -0.3
2,754,276 - -0.5
2,754,276 - +0.7
2,754,281 + +1.1
2,754,281 + -0.2
2,754,281 + -0.5
2,754,281 + +0.7
2,754,281 + -1.2
2,754,281 + -0.3
2,754,281 + +0.6
2,754,281 + -0.2
2,754,282 - -0.2
2,754,282 - +0.0
2,754,356 + A4249_RS13630 0.25 -0.8
2,754,356 + A4249_RS13630 0.25 +0.1
2,754,357 - A4249_RS13630 0.25 -0.5
2,754,357 - A4249_RS13630 0.25 -0.4
2,754,357 - A4249_RS13630 0.25 +0.5
2,754,357 - A4249_RS13630 0.25 -0.2
2,754,360 + A4249_RS13630 0.26 +0.8
2,754,360 + A4249_RS13630 0.26 +0.6
2,754,360 + A4249_RS13630 0.26 -0.2
2,754,360 + A4249_RS13630 0.26 +0.4
2,754,360 + A4249_RS13630 0.26 -0.6
2,754,360 + A4249_RS13630 0.26 -0.2
2,754,360 + A4249_RS13630 0.26 -1.2
2,754,360 + A4249_RS13630 0.26 -1.1
2,754,360 + A4249_RS13630 0.26 +0.0
2,754,360 + A4249_RS13630 0.26 +0.1
2,754,360 + A4249_RS13630 0.26 +0.4
2,754,360 + A4249_RS13630 0.26 -0.1
2,754,361 - A4249_RS13630 0.26 -0.4
2,754,361 - A4249_RS13630 0.26 +0.0
2,754,361 - A4249_RS13630 0.26 -1.0
2,754,361 - A4249_RS13630 0.26 -0.1
2,754,361 - A4249_RS13630 0.26 -0.2
2,754,361 - A4249_RS13630 0.26 +1.8
2,754,361 - A4249_RS13630 0.26 -0.1
2,754,470 + A4249_RS13630 0.56 -2.2
2,754,470 + A4249_RS13630 0.56 -0.6
2,754,471 - A4249_RS13630 0.56 +0.4
2,754,524 + A4249_RS13630 0.70 -0.6
2,754,524 + A4249_RS13630 0.70 +0.4
2,754,524 + A4249_RS13630 0.70 -0.8
2,754,524 + A4249_RS13630 0.70 -0.0
2,754,685 + -1.1
2,754,685 + +0.8
2,754,686 - -0.3
2,754,686 - -1.1
2,754,686 - +1.1
2,754,750 + -0.8
2,754,782 + +1.0
2,754,782 + -0.7

Or see this region's nucleotide sequence