Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13310

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13300 and A4249_RS13305 overlap by 4 nucleotidesA4249_RS13305 and A4249_RS13310 are separated by 12 nucleotidesA4249_RS13310 and A4249_RS13315 overlap by 4 nucleotides A4249_RS13300: A4249_RS13300 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 2,685,748 to 2,686,620 _RS13300 A4249_RS13305: A4249_RS13305 - YraN family protein, at 2,686,617 to 2,687,027 _RS13305 A4249_RS13310: A4249_RS13310 - transglutaminase family protein, at 2,687,040 to 2,687,855 _RS13310 A4249_RS13315: A4249_RS13315 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 2,687,852 to 2,689,108 _RS13315 Position (kb) 2687 2688Strain fitness (log2 ratio) -2 -1 0 1at 2686.369 kb on + strand, within A4249_RS13300at 2686.370 kb on - strand, within A4249_RS13300at 2686.553 kb on + strandat 2686.554 kb on - strandat 2686.554 kb on - strandat 2686.627 kb on + strandat 2686.627 kb on + strandat 2686.627 kb on + strandat 2686.628 kb on - strandat 2686.628 kb on - strandat 2686.628 kb on - strandat 2686.628 kb on - strandat 2686.890 kb on + strand, within A4249_RS13305at 2686.891 kb on - strand, within A4249_RS13305at 2686.954 kb on - strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.967 kb on + strand, within A4249_RS13305at 2686.968 kb on - strand, within A4249_RS13305at 2687.289 kb on + strand, within A4249_RS13310at 2687.289 kb on + strand, within A4249_RS13310at 2687.367 kb on + strand, within A4249_RS13310at 2687.367 kb on + strand, within A4249_RS13310at 2687.367 kb on + strand, within A4249_RS13310at 2687.367 kb on + strand, within A4249_RS13310at 2687.368 kb on - strand, within A4249_RS13310at 2687.368 kb on - strand, within A4249_RS13310at 2687.368 kb on - strand, within A4249_RS13310at 2687.649 kb on + strand, within A4249_RS13310at 2687.649 kb on + strand, within A4249_RS13310at 2687.650 kb on - strand, within A4249_RS13310at 2687.853 kb on + strandat 2687.853 kb on + strandat 2687.853 kb on + strandat 2687.854 kb on - strandat 2687.854 kb on - strandat 2687.854 kb on - strandat 2687.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,686,369 + A4249_RS13300 0.71 +0.7
2,686,370 - A4249_RS13300 0.71 -0.2
2,686,553 + -0.9
2,686,554 - -1.2
2,686,554 - +0.7
2,686,627 + -0.2
2,686,627 + +1.0
2,686,627 + -0.3
2,686,628 - -0.2
2,686,628 - -0.2
2,686,628 - +0.8
2,686,628 - -0.7
2,686,890 + A4249_RS13305 0.66 -0.1
2,686,891 - A4249_RS13305 0.67 +0.9
2,686,954 - A4249_RS13305 0.82 -0.7
2,686,967 + A4249_RS13305 0.85 -0.5
2,686,967 + A4249_RS13305 0.85 -0.6
2,686,967 + A4249_RS13305 0.85 +0.1
2,686,967 + A4249_RS13305 0.85 +0.3
2,686,967 + A4249_RS13305 0.85 +0.9
2,686,967 + A4249_RS13305 0.85 -1.0
2,686,967 + A4249_RS13305 0.85 +0.2
2,686,968 - A4249_RS13305 0.85 -0.3
2,687,289 + A4249_RS13310 0.31 -0.5
2,687,289 + A4249_RS13310 0.31 -1.0
2,687,367 + A4249_RS13310 0.40 -0.2
2,687,367 + A4249_RS13310 0.40 -0.4
2,687,367 + A4249_RS13310 0.40 -0.1
2,687,367 + A4249_RS13310 0.40 -0.6
2,687,368 - A4249_RS13310 0.40 -0.1
2,687,368 - A4249_RS13310 0.40 +0.3
2,687,368 - A4249_RS13310 0.40 +0.8
2,687,649 + A4249_RS13310 0.75 -0.6
2,687,649 + A4249_RS13310 0.75 +0.4
2,687,650 - A4249_RS13310 0.75 -2.1
2,687,853 + -0.6
2,687,853 + -0.8
2,687,853 + +0.1
2,687,854 - -0.7
2,687,854 - -1.3
2,687,854 - -0.4
2,687,854 - -0.2

Or see this region's nucleotide sequence