Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12325

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12315 and A4249_RS12320 are separated by 32 nucleotidesA4249_RS12320 and A4249_RS12325 are separated by 57 nucleotidesA4249_RS12325 and A4249_RS12330 overlap by 1 nucleotidesA4249_RS12330 and A4249_RS12335 are separated by 18 nucleotides A4249_RS12315: A4249_RS12315 - hypothetical protein, at 2,473,450 to 2,474,028 _RS12315 A4249_RS12320: A4249_RS12320 - acyl-CoA thioesterase, at 2,474,061 to 2,474,462 _RS12320 A4249_RS12325: A4249_RS12325 - peptide deformylase, at 2,474,520 to 2,475,095 _RS12325 A4249_RS12330: A4249_RS12330 - hypothetical protein, at 2,475,095 to 2,475,373 _RS12330 A4249_RS12335: A4249_RS12335 - methionyl-tRNA formyltransferase, at 2,475,392 to 2,476,315 _RS12335 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -3 -2 -1 0 1at 2473.551 kb on + strand, within A4249_RS12315at 2473.552 kb on - strand, within A4249_RS12315at 2473.552 kb on - strand, within A4249_RS12315at 2473.619 kb on - strand, within A4249_RS12315at 2473.655 kb on - strand, within A4249_RS12315at 2473.691 kb on + strand, within A4249_RS12315at 2473.998 kb on + strandat 2474.027 kb on - strandat 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.292 kb on + strand, within A4249_RS12320at 2474.293 kb on - strand, within A4249_RS12320at 2474.293 kb on - strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.409 kb on + strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.410 kb on - strand, within A4249_RS12320at 2474.460 kb on + strandat 2474.460 kb on + strandat 2474.460 kb on + strandat 2474.461 kb on - strandat 2474.461 kb on - strandat 2474.461 kb on - strandat 2475.121 kb on + strandat 2475.121 kb on + strandat 2475.121 kb on + strandat 2475.121 kb on + strandat 2475.121 kb on + strandat 2475.121 kb on + strandat 2475.122 kb on - strandat 2475.122 kb on - strandat 2475.122 kb on - strandat 2475.122 kb on - strandat 2475.122 kb on - strandat 2475.123 kb on + strand, within A4249_RS12330at 2475.123 kb on + strand, within A4249_RS12330at 2475.123 kb on + strand, within A4249_RS12330at 2475.124 kb on - strand, within A4249_RS12330at 2475.124 kb on - strand, within A4249_RS12330at 2475.124 kb on - strand, within A4249_RS12330at 2475.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,473,551 + A4249_RS12315 0.17 +0.2
2,473,552 - A4249_RS12315 0.18 +1.6
2,473,552 - A4249_RS12315 0.18 +0.0
2,473,619 - A4249_RS12315 0.29 +0.9
2,473,655 - A4249_RS12315 0.35 -0.7
2,473,691 + A4249_RS12315 0.42 +0.7
2,473,998 + -2.1
2,474,027 - -0.4
2,474,292 + A4249_RS12320 0.57 -0.1
2,474,292 + A4249_RS12320 0.57 -0.1
2,474,292 + A4249_RS12320 0.57 -0.1
2,474,292 + A4249_RS12320 0.57 -0.8
2,474,293 - A4249_RS12320 0.58 -0.0
2,474,293 - A4249_RS12320 0.58 +0.3
2,474,409 + A4249_RS12320 0.87 +0.9
2,474,409 + A4249_RS12320 0.87 +0.1
2,474,409 + A4249_RS12320 0.87 -0.6
2,474,409 + A4249_RS12320 0.87 +1.0
2,474,409 + A4249_RS12320 0.87 +0.0
2,474,409 + A4249_RS12320 0.87 -0.6
2,474,410 - A4249_RS12320 0.87 -0.1
2,474,410 - A4249_RS12320 0.87 +0.0
2,474,410 - A4249_RS12320 0.87 +0.0
2,474,410 - A4249_RS12320 0.87 +0.1
2,474,410 - A4249_RS12320 0.87 -0.4
2,474,410 - A4249_RS12320 0.87 +0.1
2,474,460 + -0.1
2,474,460 + +1.0
2,474,460 + -1.1
2,474,461 - -0.1
2,474,461 - -0.3
2,474,461 - -0.1
2,475,121 + -0.2
2,475,121 + -0.6
2,475,121 + +0.5
2,475,121 + +0.0
2,475,121 + +0.2
2,475,121 + -0.1
2,475,122 - +0.2
2,475,122 - +0.6
2,475,122 - +0.0
2,475,122 - -1.2
2,475,122 - -0.1
2,475,123 + A4249_RS12330 0.10 -0.6
2,475,123 + A4249_RS12330 0.10 -0.1
2,475,123 + A4249_RS12330 0.10 +0.8
2,475,124 - A4249_RS12330 0.10 +0.7
2,475,124 - A4249_RS12330 0.10 +0.1
2,475,124 - A4249_RS12330 0.10 -3.0
2,475,371 + -0.3

Or see this region's nucleotide sequence