Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10600

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10595 and A4249_RS10600 are separated by 74 nucleotidesA4249_RS10600 and A4249_RS16955 are separated by 110 nucleotidesA4249_RS16955 and A4249_RS16960 overlap by 4 nucleotides A4249_RS10595: A4249_RS10595 - RNA polymerase sigma factor RpoD, at 2,127,898 to 2,129,844 _RS10595 A4249_RS10600: A4249_RS10600 - DNA primase, at 2,129,919 to 2,131,778 _RS10600 A4249_RS16955: A4249_RS16955 - hypothetical protein, at 2,131,889 to 2,132,542 _RS16955 A4249_RS16960: A4249_RS16960 - transcriptional regulator, at 2,132,539 to 2,132,814 _RS16960 Position (kb) 2129 2130 2131 2132Strain fitness (log2 ratio) -1 0 1at 2129.915 kb on - strandat 2129.915 kb on - strandat 2129.921 kb on - strandat 2129.921 kb on - strandat 2129.921 kb on - strandat 2131.790 kb on - strandat 2131.790 kb on - strandat 2131.931 kb on + strandat 2131.931 kb on + strandat 2131.932 kb on - strandat 2131.932 kb on - strandat 2132.009 kb on + strand, within A4249_RS16955at 2132.010 kb on - strand, within A4249_RS16955at 2132.010 kb on - strand, within A4249_RS16955at 2132.010 kb on - strand, within A4249_RS16955at 2132.096 kb on - strand, within A4249_RS16955at 2132.096 kb on - strand, within A4249_RS16955at 2132.096 kb on - strand, within A4249_RS16955at 2132.096 kb on - strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.119 kb on + strand, within A4249_RS16955at 2132.120 kb on - strand, within A4249_RS16955at 2132.120 kb on - strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.121 kb on + strand, within A4249_RS16955at 2132.122 kb on - strand, within A4249_RS16955at 2132.122 kb on - strand, within A4249_RS16955at 2132.122 kb on - strand, within A4249_RS16955at 2132.122 kb on - strand, within A4249_RS16955at 2132.187 kb on + strand, within A4249_RS16955at 2132.187 kb on + strand, within A4249_RS16955at 2132.187 kb on + strand, within A4249_RS16955at 2132.187 kb on + strand, within A4249_RS16955at 2132.188 kb on - strand, within A4249_RS16955at 2132.188 kb on - strand, within A4249_RS16955at 2132.188 kb on - strand, within A4249_RS16955at 2132.188 kb on - strand, within A4249_RS16955at 2132.188 kb on - strand, within A4249_RS16955at 2132.209 kb on + strand, within A4249_RS16955at 2132.210 kb on - strand, within A4249_RS16955at 2132.273 kb on - strand, within A4249_RS16955at 2132.273 kb on - strand, within A4249_RS16955at 2132.341 kb on - strand, within A4249_RS16955at 2132.490 kb on + strandat 2132.490 kb on + strandat 2132.491 kb on - strandat 2132.491 kb on - strandat 2132.582 kb on + strand, within A4249_RS16960at 2132.582 kb on + strand, within A4249_RS16960at 2132.582 kb on + strand, within A4249_RS16960at 2132.583 kb on - strand, within A4249_RS16960at 2132.602 kb on + strand, within A4249_RS16960at 2132.602 kb on + strand, within A4249_RS16960at 2132.602 kb on + strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.603 kb on - strand, within A4249_RS16960at 2132.707 kb on + strand, within A4249_RS16960at 2132.707 kb on + strand, within A4249_RS16960at 2132.708 kb on - strand, within A4249_RS16960at 2132.708 kb on - strand, within A4249_RS16960at 2132.709 kb on + strand, within A4249_RS16960at 2132.709 kb on + strand, within A4249_RS16960at 2132.710 kb on - strand, within A4249_RS16960at 2132.710 kb on - strand, within A4249_RS16960at 2132.710 kb on - strand, within A4249_RS16960

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,129,915 - +0.3
2,129,915 - +0.3
2,129,921 - -0.2
2,129,921 - -0.3
2,129,921 - +0.3
2,131,790 - +0.3
2,131,790 - +0.2
2,131,931 + -0.2
2,131,931 + +1.0
2,131,932 - -0.0
2,131,932 - +0.4
2,132,009 + A4249_RS16955 0.18 +1.0
2,132,010 - A4249_RS16955 0.19 +0.2
2,132,010 - A4249_RS16955 0.19 -0.3
2,132,010 - A4249_RS16955 0.19 +0.1
2,132,096 - A4249_RS16955 0.32 +0.6
2,132,096 - A4249_RS16955 0.32 -1.1
2,132,096 - A4249_RS16955 0.32 -1.0
2,132,096 - A4249_RS16955 0.32 +0.5
2,132,119 + A4249_RS16955 0.35 +0.3
2,132,119 + A4249_RS16955 0.35 -0.6
2,132,119 + A4249_RS16955 0.35 +0.4
2,132,119 + A4249_RS16955 0.35 -0.9
2,132,119 + A4249_RS16955 0.35 -0.4
2,132,119 + A4249_RS16955 0.35 -0.3
2,132,119 + A4249_RS16955 0.35 +0.0
2,132,120 - A4249_RS16955 0.35 -0.5
2,132,120 - A4249_RS16955 0.35 +0.7
2,132,121 + A4249_RS16955 0.35 +0.1
2,132,121 + A4249_RS16955 0.35 +0.1
2,132,121 + A4249_RS16955 0.35 -0.4
2,132,121 + A4249_RS16955 0.35 -0.3
2,132,121 + A4249_RS16955 0.35 -0.3
2,132,121 + A4249_RS16955 0.35 +0.0
2,132,122 - A4249_RS16955 0.36 +1.0
2,132,122 - A4249_RS16955 0.36 +0.6
2,132,122 - A4249_RS16955 0.36 +0.8
2,132,122 - A4249_RS16955 0.36 -0.4
2,132,187 + A4249_RS16955 0.46 +0.8
2,132,187 + A4249_RS16955 0.46 +0.3
2,132,187 + A4249_RS16955 0.46 -0.1
2,132,187 + A4249_RS16955 0.46 -1.3
2,132,188 - A4249_RS16955 0.46 -0.1
2,132,188 - A4249_RS16955 0.46 +0.5
2,132,188 - A4249_RS16955 0.46 +1.3
2,132,188 - A4249_RS16955 0.46 -1.0
2,132,188 - A4249_RS16955 0.46 +0.5
2,132,209 + A4249_RS16955 0.49 -1.6
2,132,210 - A4249_RS16955 0.49 -0.2
2,132,273 - A4249_RS16955 0.59 +0.9
2,132,273 - A4249_RS16955 0.59 -1.3
2,132,341 - A4249_RS16955 0.69 +0.4
2,132,490 + +0.4
2,132,490 + +0.5
2,132,491 - -0.3
2,132,491 - -0.2
2,132,582 + A4249_RS16960 0.16 -0.5
2,132,582 + A4249_RS16960 0.16 +0.9
2,132,582 + A4249_RS16960 0.16 +0.3
2,132,583 - A4249_RS16960 0.16 +1.3
2,132,602 + A4249_RS16960 0.23 -1.6
2,132,602 + A4249_RS16960 0.23 +0.1
2,132,602 + A4249_RS16960 0.23 -0.3
2,132,603 - A4249_RS16960 0.23 +0.1
2,132,603 - A4249_RS16960 0.23 +0.9
2,132,603 - A4249_RS16960 0.23 -0.2
2,132,603 - A4249_RS16960 0.23 +0.5
2,132,603 - A4249_RS16960 0.23 -0.7
2,132,603 - A4249_RS16960 0.23 -1.0
2,132,707 + A4249_RS16960 0.61 -1.2
2,132,707 + A4249_RS16960 0.61 +0.2
2,132,708 - A4249_RS16960 0.61 -1.3
2,132,708 - A4249_RS16960 0.61 -1.2
2,132,709 + A4249_RS16960 0.62 +0.3
2,132,709 + A4249_RS16960 0.62 -0.4
2,132,710 - A4249_RS16960 0.62 +0.8
2,132,710 - A4249_RS16960 0.62 -0.5
2,132,710 - A4249_RS16960 0.62 -0.1

Or see this region's nucleotide sequence