Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10360

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10350 and A4249_RS10355 are separated by 63 nucleotidesA4249_RS10355 and A4249_RS10360 are separated by 164 nucleotidesA4249_RS10360 and A4249_RS10365 are separated by 79 nucleotidesA4249_RS10365 and A4249_RS10370 overlap by 4 nucleotides A4249_RS10350: A4249_RS10350 - hypothetical protein, at 2,076,746 to 2,077,414 _RS10350 A4249_RS10355: A4249_RS10355 - SufE family protein, at 2,077,478 to 2,077,915 _RS10355 A4249_RS10360: A4249_RS10360 - HAMP domain-containing sensor histidine kinase, at 2,078,080 to 2,079,789 _RS10360 A4249_RS10365: A4249_RS10365 - hypothetical protein, at 2,079,869 to 2,080,132 _RS10365 A4249_RS10370: A4249_RS10370 - hypothetical protein, at 2,080,129 to 2,080,989 _RS10370 Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -2 -1 0 1at 2077.134 kb on + strand, within A4249_RS10350at 2077.134 kb on + strand, within A4249_RS10350at 2077.134 kb on + strand, within A4249_RS10350at 2077.134 kb on + strand, within A4249_RS10350at 2077.134 kb on + strand, within A4249_RS10350at 2077.134 kb on + strand, within A4249_RS10350at 2077.135 kb on - strand, within A4249_RS10350at 2077.135 kb on - strand, within A4249_RS10350at 2077.135 kb on - strand, within A4249_RS10350at 2077.135 kb on - strand, within A4249_RS10350at 2077.135 kb on - strand, within A4249_RS10350at 2077.293 kb on + strand, within A4249_RS10350at 2077.293 kb on + strand, within A4249_RS10350at 2077.293 kb on + strand, within A4249_RS10350at 2077.294 kb on - strand, within A4249_RS10350at 2077.294 kb on - strand, within A4249_RS10350at 2077.344 kb on + strand, within A4249_RS10350at 2077.344 kb on + strand, within A4249_RS10350at 2077.344 kb on + strand, within A4249_RS10350at 2077.344 kb on + strand, within A4249_RS10350at 2077.344 kb on + strand, within A4249_RS10350at 2077.345 kb on - strand, within A4249_RS10350at 2077.345 kb on - strand, within A4249_RS10350at 2077.479 kb on + strandat 2077.480 kb on - strandat 2077.480 kb on - strandat 2077.480 kb on - strandat 2077.927 kb on + strandat 2077.927 kb on + strandat 2077.927 kb on + strandat 2077.927 kb on + strandat 2077.927 kb on + strandat 2077.928 kb on - strandat 2077.972 kb on + strandat 2077.973 kb on - strandat 2078.043 kb on + strandat 2078.156 kb on + strandat 2078.157 kb on - strandat 2078.157 kb on - strandat 2078.157 kb on - strandat 2079.075 kb on + strand, within A4249_RS10360at 2079.075 kb on + strand, within A4249_RS10360at 2079.076 kb on - strand, within A4249_RS10360at 2079.076 kb on - strand, within A4249_RS10360at 2079.076 kb on - strand, within A4249_RS10360at 2079.167 kb on - strand, within A4249_RS10360at 2079.794 kb on + strandat 2079.794 kb on + strandat 2079.795 kb on - strandat 2079.795 kb on - strandat 2079.795 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.828 kb on - strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.835 kb on + strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.836 kb on - strandat 2079.868 kb on + strandat 2079.869 kb on - strandat 2080.050 kb on + strand, within A4249_RS10365at 2080.051 kb on - strand, within A4249_RS10365at 2080.051 kb on - strand, within A4249_RS10365at 2080.130 kb on + strandat 2080.130 kb on + strandat 2080.130 kb on + strandat 2080.131 kb on - strandat 2080.131 kb on - strandat 2080.330 kb on - strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.583 kb on + strand, within A4249_RS10370at 2080.584 kb on - strand, within A4249_RS10370

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,077,134 + A4249_RS10350 0.58 -0.2
2,077,134 + A4249_RS10350 0.58 -0.3
2,077,134 + A4249_RS10350 0.58 -2.0
2,077,134 + A4249_RS10350 0.58 +0.3
2,077,134 + A4249_RS10350 0.58 +0.4
2,077,134 + A4249_RS10350 0.58 -0.2
2,077,135 - A4249_RS10350 0.58 +0.2
2,077,135 - A4249_RS10350 0.58 +0.5
2,077,135 - A4249_RS10350 0.58 +0.1
2,077,135 - A4249_RS10350 0.58 -0.4
2,077,135 - A4249_RS10350 0.58 +0.4
2,077,293 + A4249_RS10350 0.82 -0.5
2,077,293 + A4249_RS10350 0.82 -0.3
2,077,293 + A4249_RS10350 0.82 +0.5
2,077,294 - A4249_RS10350 0.82 -0.6
2,077,294 - A4249_RS10350 0.82 +0.8
2,077,344 + A4249_RS10350 0.89 -0.2
2,077,344 + A4249_RS10350 0.89 +0.3
2,077,344 + A4249_RS10350 0.89 -0.7
2,077,344 + A4249_RS10350 0.89 +0.6
2,077,344 + A4249_RS10350 0.89 -0.3
2,077,345 - A4249_RS10350 0.90 -0.1
2,077,345 - A4249_RS10350 0.90 -0.7
2,077,479 + -0.8
2,077,480 - -0.1
2,077,480 - +0.2
2,077,480 - +0.7
2,077,927 + -0.1
2,077,927 + +0.4
2,077,927 + -0.6
2,077,927 + +0.5
2,077,927 + -0.6
2,077,928 - -0.1
2,077,972 + -0.5
2,077,973 - -0.7
2,078,043 + -0.4
2,078,156 + +0.7
2,078,157 - -0.3
2,078,157 - +0.0
2,078,157 - +0.8
2,079,075 + A4249_RS10360 0.58 -0.8
2,079,075 + A4249_RS10360 0.58 -0.3
2,079,076 - A4249_RS10360 0.58 -0.7
2,079,076 - A4249_RS10360 0.58 -1.5
2,079,076 - A4249_RS10360 0.58 -0.1
2,079,167 - A4249_RS10360 0.64 -0.9
2,079,794 + -0.3
2,079,794 + +0.6
2,079,795 - -0.3
2,079,795 - -0.4
2,079,795 - +1.5
2,079,828 - -0.0
2,079,828 - -0.9
2,079,828 - -0.3
2,079,828 - -1.1
2,079,835 + -0.9
2,079,835 + -0.2
2,079,835 + +0.6
2,079,835 + -0.1
2,079,835 + +0.2
2,079,835 + +0.3
2,079,836 - -0.6
2,079,836 - -0.5
2,079,836 - +1.0
2,079,836 - -1.0
2,079,836 - -0.5
2,079,836 - -0.2
2,079,868 + -0.4
2,079,869 - -1.9
2,080,050 + A4249_RS10365 0.69 +0.3
2,080,051 - A4249_RS10365 0.69 +0.5
2,080,051 - A4249_RS10365 0.69 -0.5
2,080,130 + +0.3
2,080,130 + -0.3
2,080,130 + +0.3
2,080,131 - -0.1
2,080,131 - -0.0
2,080,330 - A4249_RS10370 0.23 -0.9
2,080,583 + A4249_RS10370 0.53 -0.3
2,080,583 + A4249_RS10370 0.53 -0.3
2,080,583 + A4249_RS10370 0.53 +0.6
2,080,583 + A4249_RS10370 0.53 +0.4
2,080,584 - A4249_RS10370 0.53 -0.4

Or see this region's nucleotide sequence