Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10035

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10030 and A4249_RS10035 are separated by 90 nucleotidesA4249_RS10035 and A4249_RS10040 are separated by 253 nucleotides A4249_RS10030: A4249_RS10030 - dihydroxy-acid dehydratase, at 2,013,455 to 2,015,194 _RS10030 A4249_RS10035: A4249_RS10035 - hypothetical protein, at 2,015,285 to 2,015,437 _RS10035 A4249_RS10040: A4249_RS10040 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,015,691 to 2,016,698 _RS10040 Position (kb) 2015 2016Strain fitness (log2 ratio) -2 -1 0 1at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.413 kb on + strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.414 kb on - strand, within A4249_RS10030at 2014.700 kb on - strand, within A4249_RS10030at 2014.700 kb on - strand, within A4249_RS10030at 2014.734 kb on + strand, within A4249_RS10030at 2014.734 kb on + strand, within A4249_RS10030at 2014.735 kb on - strand, within A4249_RS10030at 2014.737 kb on + strand, within A4249_RS10030at 2014.737 kb on + strand, within A4249_RS10030at 2014.738 kb on - strand, within A4249_RS10030at 2014.738 kb on - strand, within A4249_RS10030at 2014.753 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.014 kb on + strand, within A4249_RS10030at 2015.015 kb on - strand, within A4249_RS10030at 2015.015 kb on - strand, within A4249_RS10030at 2015.015 kb on - strand, within A4249_RS10030at 2015.015 kb on - strand, within A4249_RS10030at 2015.103 kb on + strandat 2015.103 kb on + strandat 2015.103 kb on + strandat 2015.104 kb on - strandat 2015.104 kb on - strandat 2015.104 kb on - strandat 2015.179 kb on + strandat 2015.281 kb on + strandat 2015.281 kb on + strandat 2015.315 kb on - strand, within A4249_RS10035at 2015.315 kb on - strand, within A4249_RS10035at 2015.330 kb on + strand, within A4249_RS10035at 2015.331 kb on - strand, within A4249_RS10035at 2015.338 kb on + strand, within A4249_RS10035at 2015.338 kb on + strand, within A4249_RS10035at 2015.338 kb on + strand, within A4249_RS10035at 2015.339 kb on - strand, within A4249_RS10035at 2015.339 kb on - strand, within A4249_RS10035at 2015.348 kb on + strand, within A4249_RS10035at 2015.348 kb on + strand, within A4249_RS10035at 2015.348 kb on + strand, within A4249_RS10035at 2015.348 kb on + strand, within A4249_RS10035at 2015.348 kb on + strand, within A4249_RS10035at 2015.349 kb on - strand, within A4249_RS10035at 2015.602 kb on + strandat 2015.602 kb on + strandat 2015.603 kb on - strandat 2015.654 kb on + strandat 2015.654 kb on + strandat 2015.654 kb on + strandat 2015.655 kb on - strandat 2015.655 kb on - strandat 2015.655 kb on - strandat 2015.655 kb on - strandat 2015.656 kb on + strandat 2015.656 kb on + strandat 2015.656 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.658 kb on + strandat 2015.670 kb on + strandat 2015.670 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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2,014,413 + A4249_RS10030 0.55 -0.9
2,014,413 + A4249_RS10030 0.55 -0.6
2,014,413 + A4249_RS10030 0.55 +0.7
2,014,413 + A4249_RS10030 0.55 +0.3
2,014,413 + A4249_RS10030 0.55 -0.9
2,014,413 + A4249_RS10030 0.55 -1.0
2,014,413 + A4249_RS10030 0.55 -1.0
2,014,413 + A4249_RS10030 0.55 +0.5
2,014,413 + A4249_RS10030 0.55 -0.6
2,014,413 + A4249_RS10030 0.55 -1.9
2,014,414 - A4249_RS10030 0.55 +0.0
2,014,414 - A4249_RS10030 0.55 -0.5
2,014,414 - A4249_RS10030 0.55 -0.4
2,014,414 - A4249_RS10030 0.55 -0.8
2,014,414 - A4249_RS10030 0.55 +0.3
2,014,414 - A4249_RS10030 0.55 -0.8
2,014,414 - A4249_RS10030 0.55 +0.2
2,014,414 - A4249_RS10030 0.55 -0.8
2,014,414 - A4249_RS10030 0.55 -0.5
2,014,414 - A4249_RS10030 0.55 -0.9
2,014,414 - A4249_RS10030 0.55 -0.5
2,014,414 - A4249_RS10030 0.55 +0.2
2,014,414 - A4249_RS10030 0.55 -0.2
2,014,700 - A4249_RS10030 0.72 +0.3
2,014,700 - A4249_RS10030 0.72 -1.0
2,014,734 + A4249_RS10030 0.74 -0.1
2,014,734 + A4249_RS10030 0.74 -0.9
2,014,735 - A4249_RS10030 0.74 -0.4
2,014,737 + A4249_RS10030 0.74 +0.4
2,014,737 + A4249_RS10030 0.74 +0.7
2,014,738 - A4249_RS10030 0.74 +0.9
2,014,738 - A4249_RS10030 0.74 -0.6
2,014,753 + A4249_RS10030 0.75 +0.3
2,015,014 + A4249_RS10030 0.90 -0.4
2,015,014 + A4249_RS10030 0.90 +0.3
2,015,014 + A4249_RS10030 0.90 +0.0
2,015,014 + A4249_RS10030 0.90 +0.2
2,015,014 + A4249_RS10030 0.90 -0.4
2,015,014 + A4249_RS10030 0.90 +0.4
2,015,014 + A4249_RS10030 0.90 -0.2
2,015,014 + A4249_RS10030 0.90 -0.6
2,015,014 + A4249_RS10030 0.90 +0.5
2,015,014 + A4249_RS10030 0.90 +0.5
2,015,014 + A4249_RS10030 0.90 -0.1
2,015,014 + A4249_RS10030 0.90 -0.3
2,015,015 - A4249_RS10030 0.90 -0.3
2,015,015 - A4249_RS10030 0.90 -1.0
2,015,015 - A4249_RS10030 0.90 +0.9
2,015,015 - A4249_RS10030 0.90 -0.2
2,015,103 + -0.1
2,015,103 + -0.5
2,015,103 + -0.4
2,015,104 - -0.4
2,015,104 - -0.7
2,015,104 - +0.1
2,015,179 + -0.5
2,015,281 + -0.1
2,015,281 + +0.5
2,015,315 - A4249_RS10035 0.20 +0.8
2,015,315 - A4249_RS10035 0.20 -0.2
2,015,330 + A4249_RS10035 0.29 +0.1
2,015,331 - A4249_RS10035 0.30 +0.1
2,015,338 + A4249_RS10035 0.35 -0.3
2,015,338 + A4249_RS10035 0.35 +0.3
2,015,338 + A4249_RS10035 0.35 +0.0
2,015,339 - A4249_RS10035 0.35 -0.9
2,015,339 - A4249_RS10035 0.35 -1.3
2,015,348 + A4249_RS10035 0.41 -0.2
2,015,348 + A4249_RS10035 0.41 +0.6
2,015,348 + A4249_RS10035 0.41 -1.6
2,015,348 + A4249_RS10035 0.41 +0.1
2,015,348 + A4249_RS10035 0.41 -0.5
2,015,349 - A4249_RS10035 0.42 +0.1
2,015,602 + -0.9
2,015,602 + -0.0
2,015,603 - +0.8
2,015,654 + -0.3
2,015,654 + -1.2
2,015,654 + +1.2
2,015,655 - -0.0
2,015,655 - -0.4
2,015,655 - -0.5
2,015,655 - -0.1
2,015,656 + -0.3
2,015,656 + -0.5
2,015,656 + -0.2
2,015,658 + -0.6
2,015,658 + -0.2
2,015,658 + -1.9
2,015,658 + +0.9
2,015,658 + +0.0
2,015,658 + +0.2
2,015,658 + +1.5
2,015,658 + -0.5
2,015,658 + -0.1
2,015,658 + -0.3
2,015,658 + +0.9
2,015,658 + -0.5
2,015,670 + +0.7
2,015,670 + +1.6

Or see this region's nucleotide sequence