Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09825

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09820 and A4249_RS09825 are separated by 82 nucleotidesA4249_RS09825 and A4249_RS09830 are separated by 4 nucleotides A4249_RS09820: A4249_RS09820 - branched-chain amino acid aminotransferase, at 1,957,106 to 1,957,984 _RS09820 A4249_RS09825: A4249_RS09825 - response regulator transcription factor, at 1,958,067 to 1,958,804 _RS09825 A4249_RS09830: A4249_RS09830 - ATP-binding protein, at 1,958,809 to 1,960,176 _RS09830 Position (kb) 1958 1959Strain fitness (log2 ratio) -1 0 1 2at 1957.107 kb on + strandat 1957.107 kb on + strandat 1957.107 kb on + strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1958.017 kb on - strandat 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.020 kb on - strand, within A4249_RS09830at 1959.200 kb on - strand, within A4249_RS09830at 1959.230 kb on - strand, within A4249_RS09830at 1959.312 kb on + strand, within A4249_RS09830at 1959.312 kb on + strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.313 kb on - strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.669 kb on + strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830at 1959.670 kb on - strand, within A4249_RS09830

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,957,107 + -1.5
1,957,107 + +0.2
1,957,107 + -0.5
1,957,108 - +0.4
1,957,108 - +0.0
1,957,108 - +0.1
1,957,108 - -0.4
1,957,108 - -0.6
1,957,108 - -1.3
1,957,108 - +0.7
1,957,108 - +0.1
1,958,017 - +0.2
1,959,020 - A4249_RS09830 0.15 +0.9
1,959,020 - A4249_RS09830 0.15 -0.2
1,959,020 - A4249_RS09830 0.15 +1.2
1,959,020 - A4249_RS09830 0.15 -0.3
1,959,020 - A4249_RS09830 0.15 -0.4
1,959,200 - A4249_RS09830 0.29 -0.4
1,959,230 - A4249_RS09830 0.31 +1.8
1,959,312 + A4249_RS09830 0.37 +0.9
1,959,312 + A4249_RS09830 0.37 -0.5
1,959,313 - A4249_RS09830 0.37 -1.1
1,959,313 - A4249_RS09830 0.37 -1.2
1,959,313 - A4249_RS09830 0.37 -0.1
1,959,669 + A4249_RS09830 0.63 +1.0
1,959,669 + A4249_RS09830 0.63 +1.6
1,959,669 + A4249_RS09830 0.63 +0.9
1,959,669 + A4249_RS09830 0.63 +0.7
1,959,669 + A4249_RS09830 0.63 -0.8
1,959,669 + A4249_RS09830 0.63 -0.3
1,959,669 + A4249_RS09830 0.63 +0.7
1,959,669 + A4249_RS09830 0.63 +0.2
1,959,670 - A4249_RS09830 0.63 +0.0
1,959,670 - A4249_RS09830 0.63 +2.2
1,959,670 - A4249_RS09830 0.63 +0.7
1,959,670 - A4249_RS09830 0.63 -0.3

Or see this region's nucleotide sequence