Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08965

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16995 and A4249_RS08960 are separated by 121 nucleotidesA4249_RS08960 and A4249_RS08965 are separated by 187 nucleotidesA4249_RS08965 and A4249_RS08970 are separated by 37 nucleotidesA4249_RS08970 and A4249_RS08975 are separated by 20 nucleotides A4249_RS16995: A4249_RS16995 - phosphoglycerate dehydrogenase, at 1,792,432 to 1,794,324 _RS16995 A4249_RS08960: A4249_RS08960 - hypothetical protein, at 1,794,446 to 1,794,985 _RS08960 A4249_RS08965: A4249_RS08965 - Hsp33 family molecular chaperone, at 1,795,173 to 1,796,096 _RS08965 A4249_RS08970: A4249_RS08970 - phosphate regulon transcriptional regulator PhoB, at 1,796,134 to 1,796,826 _RS08970 A4249_RS08975: A4249_RS08975 - phosphate signaling complex protein PhoU, at 1,796,847 to 1,797,572 _RS08975 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -2 -1 0 1 2at 1794.396 kb on - strandat 1794.396 kb on - strandat 1794.460 kb on + strandat 1794.461 kb on - strandat 1794.573 kb on + strand, within A4249_RS08960at 1794.573 kb on + strand, within A4249_RS08960at 1794.573 kb on + strand, within A4249_RS08960at 1794.573 kb on + strand, within A4249_RS08960at 1794.573 kb on + strand, within A4249_RS08960at 1794.574 kb on - strand, within A4249_RS08960at 1794.574 kb on - strand, within A4249_RS08960at 1794.574 kb on - strand, within A4249_RS08960at 1794.574 kb on - strand, within A4249_RS08960at 1794.687 kb on + strand, within A4249_RS08960at 1794.688 kb on - strand, within A4249_RS08960at 1794.688 kb on - strand, within A4249_RS08960at 1794.688 kb on - strand, within A4249_RS08960at 1794.811 kb on + strand, within A4249_RS08960at 1794.811 kb on + strand, within A4249_RS08960at 1794.811 kb on + strand, within A4249_RS08960at 1794.811 kb on + strand, within A4249_RS08960at 1794.811 kb on + strand, within A4249_RS08960at 1794.812 kb on - strand, within A4249_RS08960at 1794.812 kb on - strand, within A4249_RS08960at 1794.812 kb on - strand, within A4249_RS08960at 1794.812 kb on - strand, within A4249_RS08960at 1794.855 kb on + strand, within A4249_RS08960at 1794.885 kb on + strand, within A4249_RS08960at 1794.885 kb on + strand, within A4249_RS08960at 1794.885 kb on + strand, within A4249_RS08960at 1794.885 kb on + strand, within A4249_RS08960at 1794.886 kb on - strand, within A4249_RS08960at 1794.886 kb on - strand, within A4249_RS08960at 1794.886 kb on - strand, within A4249_RS08960at 1795.005 kb on + strandat 1795.005 kb on + strandat 1795.005 kb on + strandat 1795.005 kb on + strandat 1795.006 kb on - strandat 1795.006 kb on - strandat 1795.099 kb on + strandat 1795.109 kb on - strandat 1795.130 kb on + strandat 1795.130 kb on + strandat 1795.130 kb on + strandat 1795.130 kb on + strandat 1795.131 kb on - strandat 1795.131 kb on - strandat 1795.131 kb on - strandat 1795.131 kb on - strandat 1795.131 kb on - strandat 1795.134 kb on + strandat 1795.135 kb on - strandat 1795.135 kb on - strandat 1795.135 kb on - strandat 1796.055 kb on + strandat 1796.055 kb on + strandat 1796.055 kb on + strandat 1796.135 kb on + strandat 1796.135 kb on + strandat 1796.135 kb on + strandat 1796.136 kb on - strandat 1796.136 kb on - strandat 1796.136 kb on - strandat 1796.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,794,396 - +0.2
1,794,396 - -0.2
1,794,460 + -0.1
1,794,461 - +0.4
1,794,573 + A4249_RS08960 0.24 -0.1
1,794,573 + A4249_RS08960 0.24 +0.7
1,794,573 + A4249_RS08960 0.24 -1.9
1,794,573 + A4249_RS08960 0.24 -0.2
1,794,573 + A4249_RS08960 0.24 +1.0
1,794,574 - A4249_RS08960 0.24 +0.3
1,794,574 - A4249_RS08960 0.24 +0.3
1,794,574 - A4249_RS08960 0.24 -0.4
1,794,574 - A4249_RS08960 0.24 -0.3
1,794,687 + A4249_RS08960 0.45 +1.7
1,794,688 - A4249_RS08960 0.45 -0.2
1,794,688 - A4249_RS08960 0.45 -0.6
1,794,688 - A4249_RS08960 0.45 +1.9
1,794,811 + A4249_RS08960 0.68 +0.0
1,794,811 + A4249_RS08960 0.68 -0.2
1,794,811 + A4249_RS08960 0.68 +0.2
1,794,811 + A4249_RS08960 0.68 -1.6
1,794,811 + A4249_RS08960 0.68 +0.2
1,794,812 - A4249_RS08960 0.68 +0.6
1,794,812 - A4249_RS08960 0.68 -0.1
1,794,812 - A4249_RS08960 0.68 +0.2
1,794,812 - A4249_RS08960 0.68 -0.2
1,794,855 + A4249_RS08960 0.76 -0.1
1,794,885 + A4249_RS08960 0.81 +0.5
1,794,885 + A4249_RS08960 0.81 -0.5
1,794,885 + A4249_RS08960 0.81 +0.1
1,794,885 + A4249_RS08960 0.81 -0.3
1,794,886 - A4249_RS08960 0.81 -0.2
1,794,886 - A4249_RS08960 0.81 -0.0
1,794,886 - A4249_RS08960 0.81 +0.2
1,795,005 + -0.1
1,795,005 + +0.1
1,795,005 + -0.5
1,795,005 + -0.4
1,795,006 - +0.1
1,795,006 - -0.8
1,795,099 + -1.3
1,795,109 - +0.7
1,795,130 + -0.0
1,795,130 + +0.4
1,795,130 + +0.2
1,795,130 + -0.8
1,795,131 - +1.0
1,795,131 - +0.0
1,795,131 - -0.9
1,795,131 - -0.0
1,795,131 - -0.0
1,795,134 + -0.1
1,795,135 - -0.6
1,795,135 - -1.1
1,795,135 - -0.5
1,796,055 + +0.3
1,796,055 + -0.6
1,796,055 + +0.3
1,796,135 + -2.1
1,796,135 + +0.6
1,796,135 + -0.7
1,796,136 - +0.3
1,796,136 - -2.0
1,796,136 - -1.0
1,796,136 - -0.5

Or see this region's nucleotide sequence