Experiment: Xanthine 0.6574 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08775 and A4249_RS08780 are separated by 7 nucleotides A4249_RS08780 and A4249_RS08785 are separated by 110 nucleotides A4249_RS08785 and A4249_RS08790 are separated by 8 nucleotides
A4249_RS08775: A4249_RS08775 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,759,726 to 1,760,811
_RS08775
A4249_RS08780: A4249_RS08780 - pyridoxamine 5'-phosphate oxidase, at 1,760,819 to 1,761,493
_RS08780
A4249_RS08785: A4249_RS08785 - DnaJ C-terminal domain-containing protein, at 1,761,604 to 1,762,350
_RS08785
A4249_RS08790: A4249_RS08790 - chorismate synthase, at 1,762,359 to 1,763,444
_RS08790
Position (kb)
1760
1761
1762 Strain fitness (log2 ratio)
-1
0
1 at 1760.224 kb on + strand, within A4249_RS08775 at 1760.224 kb on + strand, within A4249_RS08775 at 1760.224 kb on + strand, within A4249_RS08775 at 1760.224 kb on + strand, within A4249_RS08775 at 1760.225 kb on - strand, within A4249_RS08775 at 1760.226 kb on + strand, within A4249_RS08775 at 1760.227 kb on - strand, within A4249_RS08775 at 1760.740 kb on + strand at 1760.740 kb on + strand at 1760.741 kb on - strand at 1760.741 kb on - strand at 1760.741 kb on - strand at 1760.741 kb on - strand at 1760.773 kb on + strand at 1760.774 kb on - strand at 1760.774 kb on - strand at 1760.779 kb on + strand at 1760.780 kb on - strand at 1760.780 kb on - strand at 1760.780 kb on - strand at 1761.439 kb on - strand at 1761.451 kb on - strand at 1761.504 kb on + strand at 1761.504 kb on + strand at 1761.504 kb on + strand at 1761.504 kb on + strand at 1761.505 kb on - strand at 1761.505 kb on - strand at 1761.505 kb on - strand at 1761.505 kb on - strand at 1761.505 kb on - strand at 1761.669 kb on - strand at 1761.669 kb on - strand at 1761.669 kb on - strand at 1761.796 kb on + strand, within A4249_RS08785 at 1761.797 kb on - strand, within A4249_RS08785 at 1762.021 kb on + strand, within A4249_RS08785 at 1762.021 kb on + strand, within A4249_RS08785 at 1762.021 kb on + strand, within A4249_RS08785 at 1762.021 kb on + strand, within A4249_RS08785 at 1762.021 kb on + strand, within A4249_RS08785 at 1762.022 kb on - strand, within A4249_RS08785 at 1762.022 kb on - strand, within A4249_RS08785 at 1762.022 kb on - strand, within A4249_RS08785 at 1762.022 kb on - strand, within A4249_RS08785 at 1762.022 kb on - strand, within A4249_RS08785 at 1762.301 kb on + strand at 1762.301 kb on + strand at 1762.301 kb on + strand at 1762.301 kb on + strand at 1762.301 kb on + strand at 1762.302 kb on - strand at 1762.302 kb on - strand at 1762.349 kb on - strand at 1762.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C) remove 1,760,224 + A4249_RS08775 0.46 +0.0 1,760,224 + A4249_RS08775 0.46 -0.2 1,760,224 + A4249_RS08775 0.46 +0.3 1,760,224 + A4249_RS08775 0.46 +0.1 1,760,225 - A4249_RS08775 0.46 +0.6 1,760,226 + A4249_RS08775 0.46 +0.5 1,760,227 - A4249_RS08775 0.46 +0.4 1,760,740 + -0.5 1,760,740 + -0.6 1,760,741 - +0.4 1,760,741 - -1.3 1,760,741 - -1.2 1,760,741 - +1.7 1,760,773 + -0.6 1,760,774 - +0.4 1,760,774 - +0.4 1,760,779 + -0.1 1,760,780 - -0.1 1,760,780 - -0.9 1,760,780 - -0.0 1,761,439 - -0.1 1,761,451 - +0.1 1,761,504 + +1.2 1,761,504 + -0.1 1,761,504 + +0.3 1,761,504 + -1.1 1,761,505 - -0.6 1,761,505 - -0.2 1,761,505 - -1.4 1,761,505 - +0.5 1,761,505 - +0.6 1,761,669 - -0.3 1,761,669 - +0.8 1,761,669 - -0.5 1,761,796 + A4249_RS08785 0.26 +0.4 1,761,797 - A4249_RS08785 0.26 -0.2 1,762,021 + A4249_RS08785 0.56 +0.4 1,762,021 + A4249_RS08785 0.56 -0.4 1,762,021 + A4249_RS08785 0.56 -0.8 1,762,021 + A4249_RS08785 0.56 -0.1 1,762,021 + A4249_RS08785 0.56 +1.0 1,762,022 - A4249_RS08785 0.56 +0.1 1,762,022 - A4249_RS08785 0.56 -0.7 1,762,022 - A4249_RS08785 0.56 +0.6 1,762,022 - A4249_RS08785 0.56 +1.1 1,762,022 - A4249_RS08785 0.56 +0.6 1,762,301 + +0.5 1,762,301 + +0.6 1,762,301 + -1.4 1,762,301 + -0.6 1,762,301 + -0.6 1,762,302 - -0.6 1,762,302 - -0.3 1,762,349 - +0.0 1,762,349 - +0.9
Or see this region's nucleotide sequence