Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06695

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06685 and A4249_RS06690 are separated by 48 nucleotidesA4249_RS06690 and A4249_RS06695 are separated by 26 nucleotidesA4249_RS06695 and A4249_RS06700 are separated by 48 nucleotidesA4249_RS06700 and A4249_RS06705 are separated by 72 nucleotides A4249_RS06685: A4249_RS06685 - hypothetical protein, at 1,362,905 to 1,363,498 _RS06685 A4249_RS06690: A4249_RS06690 - DUF423 domain-containing protein, at 1,363,547 to 1,363,909 _RS06690 A4249_RS06695: A4249_RS06695 - prolyl aminopeptidase, at 1,363,936 to 1,364,916 _RS06695 A4249_RS06700: A4249_RS06700 - DoxX family protein, at 1,364,965 to 1,365,363 _RS06700 A4249_RS06705: A4249_RS06705 - pirin family protein, at 1,365,436 to 1,366,134 _RS06705 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -1 0 1at 1362.965 kb on + strand, within A4249_RS06685at 1363.196 kb on + strand, within A4249_RS06685at 1363.196 kb on + strand, within A4249_RS06685at 1363.196 kb on + strand, within A4249_RS06685at 1363.197 kb on - strand, within A4249_RS06685at 1363.331 kb on + strand, within A4249_RS06685at 1363.332 kb on - strand, within A4249_RS06685at 1363.332 kb on - strand, within A4249_RS06685at 1363.332 kb on - strand, within A4249_RS06685at 1363.340 kb on + strand, within A4249_RS06685at 1363.340 kb on + strand, within A4249_RS06685at 1363.535 kb on + strandat 1363.535 kb on + strandat 1363.535 kb on + strandat 1363.536 kb on - strandat 1363.674 kb on - strand, within A4249_RS06690at 1363.674 kb on - strand, within A4249_RS06690at 1363.833 kb on + strand, within A4249_RS06690at 1363.833 kb on + strand, within A4249_RS06690at 1363.918 kb on + strandat 1363.919 kb on - strandat 1363.993 kb on + strandat 1363.993 kb on + strandat 1363.994 kb on - strandat 1363.994 kb on - strandat 1364.035 kb on + strand, within A4249_RS06695at 1364.035 kb on + strand, within A4249_RS06695at 1364.036 kb on - strand, within A4249_RS06695at 1364.036 kb on - strand, within A4249_RS06695at 1364.036 kb on - strand, within A4249_RS06695at 1364.036 kb on - strand, within A4249_RS06695at 1364.038 kb on + strand, within A4249_RS06695at 1364.038 kb on + strand, within A4249_RS06695at 1364.039 kb on - strand, within A4249_RS06695at 1364.039 kb on - strand, within A4249_RS06695at 1364.039 kb on - strand, within A4249_RS06695at 1364.143 kb on + strand, within A4249_RS06695at 1364.143 kb on + strand, within A4249_RS06695at 1364.317 kb on + strand, within A4249_RS06695at 1364.317 kb on + strand, within A4249_RS06695at 1364.344 kb on - strand, within A4249_RS06695at 1364.344 kb on - strand, within A4249_RS06695at 1364.357 kb on + strand, within A4249_RS06695at 1364.358 kb on - strand, within A4249_RS06695at 1364.401 kb on + strand, within A4249_RS06695at 1364.401 kb on + strand, within A4249_RS06695at 1364.401 kb on + strand, within A4249_RS06695at 1364.401 kb on + strand, within A4249_RS06695at 1364.402 kb on - strand, within A4249_RS06695at 1364.402 kb on - strand, within A4249_RS06695at 1364.402 kb on - strand, within A4249_RS06695at 1364.402 kb on - strand, within A4249_RS06695at 1364.494 kb on + strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.495 kb on - strand, within A4249_RS06695at 1364.497 kb on + strand, within A4249_RS06695at 1364.497 kb on + strand, within A4249_RS06695at 1364.497 kb on + strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.498 kb on - strand, within A4249_RS06695at 1364.709 kb on + strand, within A4249_RS06695at 1364.710 kb on - strand, within A4249_RS06695at 1364.727 kb on + strand, within A4249_RS06695at 1364.727 kb on + strand, within A4249_RS06695at 1364.728 kb on - strand, within A4249_RS06695at 1364.728 kb on - strand, within A4249_RS06695at 1364.728 kb on - strand, within A4249_RS06695at 1364.947 kb on + strandat 1364.959 kb on + strandat 1364.959 kb on + strandat 1364.959 kb on + strandat 1364.959 kb on + strandat 1364.960 kb on - strandat 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.026 kb on + strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.027 kb on - strand, within A4249_RS06700at 1365.044 kb on + strand, within A4249_RS06700at 1365.044 kb on + strand, within A4249_RS06700at 1365.045 kb on - strand, within A4249_RS06700at 1365.045 kb on - strand, within A4249_RS06700at 1365.045 kb on - strand, within A4249_RS06700at 1365.045 kb on - strand, within A4249_RS06700at 1365.111 kb on - strand, within A4249_RS06700at 1365.111 kb on - strand, within A4249_RS06700at 1365.111 kb on - strand, within A4249_RS06700at 1365.111 kb on - strand, within A4249_RS06700at 1365.575 kb on + strand, within A4249_RS06705at 1365.575 kb on + strand, within A4249_RS06705at 1365.576 kb on - strand, within A4249_RS06705at 1365.576 kb on - strand, within A4249_RS06705at 1365.602 kb on + strand, within A4249_RS06705at 1365.704 kb on - strand, within A4249_RS06705at 1365.704 kb on - strand, within A4249_RS06705at 1365.824 kb on + strand, within A4249_RS06705at 1365.825 kb on - strand, within A4249_RS06705at 1365.825 kb on - strand, within A4249_RS06705at 1365.825 kb on - strand, within A4249_RS06705at 1365.825 kb on - strand, within A4249_RS06705at 1365.825 kb on - strand, within A4249_RS06705

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,362,965 + A4249_RS06685 0.10 -0.4
1,363,196 + A4249_RS06685 0.49 +0.1
1,363,196 + A4249_RS06685 0.49 -0.6
1,363,196 + A4249_RS06685 0.49 -0.1
1,363,197 - A4249_RS06685 0.49 +0.3
1,363,331 + A4249_RS06685 0.72 -0.3
1,363,332 - A4249_RS06685 0.72 +0.0
1,363,332 - A4249_RS06685 0.72 +0.4
1,363,332 - A4249_RS06685 0.72 -0.1
1,363,340 + A4249_RS06685 0.73 +0.3
1,363,340 + A4249_RS06685 0.73 +0.7
1,363,535 + +0.1
1,363,535 + -0.4
1,363,535 + -0.0
1,363,536 - -0.2
1,363,674 - A4249_RS06690 0.35 -0.5
1,363,674 - A4249_RS06690 0.35 +1.1
1,363,833 + A4249_RS06690 0.79 -0.4
1,363,833 + A4249_RS06690 0.79 +0.4
1,363,918 + +0.3
1,363,919 - -0.4
1,363,993 + -0.2
1,363,993 + +1.7
1,363,994 - +0.0
1,363,994 - -0.5
1,364,035 + A4249_RS06695 0.10 +1.1
1,364,035 + A4249_RS06695 0.10 +0.4
1,364,036 - A4249_RS06695 0.10 +0.6
1,364,036 - A4249_RS06695 0.10 -0.4
1,364,036 - A4249_RS06695 0.10 -0.4
1,364,036 - A4249_RS06695 0.10 +0.0
1,364,038 + A4249_RS06695 0.10 -1.0
1,364,038 + A4249_RS06695 0.10 -0.3
1,364,039 - A4249_RS06695 0.10 +0.5
1,364,039 - A4249_RS06695 0.10 -0.3
1,364,039 - A4249_RS06695 0.10 +1.3
1,364,143 + A4249_RS06695 0.21 -0.5
1,364,143 + A4249_RS06695 0.21 -1.4
1,364,317 + A4249_RS06695 0.39 +0.8
1,364,317 + A4249_RS06695 0.39 +0.4
1,364,344 - A4249_RS06695 0.42 +0.3
1,364,344 - A4249_RS06695 0.42 +0.6
1,364,357 + A4249_RS06695 0.43 -1.5
1,364,358 - A4249_RS06695 0.43 +0.5
1,364,401 + A4249_RS06695 0.47 -0.6
1,364,401 + A4249_RS06695 0.47 -0.4
1,364,401 + A4249_RS06695 0.47 +0.4
1,364,401 + A4249_RS06695 0.47 -0.4
1,364,402 - A4249_RS06695 0.48 -0.6
1,364,402 - A4249_RS06695 0.48 +0.6
1,364,402 - A4249_RS06695 0.48 +0.2
1,364,402 - A4249_RS06695 0.48 -0.1
1,364,494 + A4249_RS06695 0.57 +0.1
1,364,495 - A4249_RS06695 0.57 -0.1
1,364,495 - A4249_RS06695 0.57 -0.3
1,364,495 - A4249_RS06695 0.57 -0.6
1,364,495 - A4249_RS06695 0.57 -0.2
1,364,495 - A4249_RS06695 0.57 -1.3
1,364,495 - A4249_RS06695 0.57 +0.0
1,364,495 - A4249_RS06695 0.57 +0.0
1,364,497 + A4249_RS06695 0.57 -0.9
1,364,497 + A4249_RS06695 0.57 +0.2
1,364,497 + A4249_RS06695 0.57 +0.0
1,364,498 - A4249_RS06695 0.57 +0.6
1,364,498 - A4249_RS06695 0.57 +0.0
1,364,498 - A4249_RS06695 0.57 -1.0
1,364,498 - A4249_RS06695 0.57 +0.8
1,364,498 - A4249_RS06695 0.57 +0.3
1,364,498 - A4249_RS06695 0.57 +0.2
1,364,498 - A4249_RS06695 0.57 -0.3
1,364,709 + A4249_RS06695 0.79 +0.1
1,364,710 - A4249_RS06695 0.79 -0.7
1,364,727 + A4249_RS06695 0.81 -0.3
1,364,727 + A4249_RS06695 0.81 -1.4
1,364,728 - A4249_RS06695 0.81 -0.0
1,364,728 - A4249_RS06695 0.81 -0.4
1,364,728 - A4249_RS06695 0.81 -0.5
1,364,947 + -0.8
1,364,959 + +1.1
1,364,959 + +0.1
1,364,959 + -0.4
1,364,959 + +0.5
1,364,960 - -0.4
1,365,026 + A4249_RS06700 0.15 -1.0
1,365,026 + A4249_RS06700 0.15 +0.3
1,365,026 + A4249_RS06700 0.15 -0.1
1,365,026 + A4249_RS06700 0.15 -0.2
1,365,026 + A4249_RS06700 0.15 +0.4
1,365,026 + A4249_RS06700 0.15 +0.8
1,365,026 + A4249_RS06700 0.15 -1.0
1,365,027 - A4249_RS06700 0.16 -0.4
1,365,027 - A4249_RS06700 0.16 +0.1
1,365,027 - A4249_RS06700 0.16 +0.5
1,365,027 - A4249_RS06700 0.16 -0.5
1,365,027 - A4249_RS06700 0.16 -0.4
1,365,027 - A4249_RS06700 0.16 -0.8
1,365,027 - A4249_RS06700 0.16 -0.5
1,365,027 - A4249_RS06700 0.16 +0.2
1,365,044 + A4249_RS06700 0.20 +0.2
1,365,044 + A4249_RS06700 0.20 -0.4
1,365,045 - A4249_RS06700 0.20 +0.2
1,365,045 - A4249_RS06700 0.20 +0.0
1,365,045 - A4249_RS06700 0.20 -0.9
1,365,045 - A4249_RS06700 0.20 -0.4
1,365,111 - A4249_RS06700 0.37 +0.2
1,365,111 - A4249_RS06700 0.37 -0.6
1,365,111 - A4249_RS06700 0.37 -0.3
1,365,111 - A4249_RS06700 0.37 +0.0
1,365,575 + A4249_RS06705 0.20 +0.1
1,365,575 + A4249_RS06705 0.20 -0.5
1,365,576 - A4249_RS06705 0.20 -0.3
1,365,576 - A4249_RS06705 0.20 +0.4
1,365,602 + A4249_RS06705 0.24 +0.7
1,365,704 - A4249_RS06705 0.38 -0.0
1,365,704 - A4249_RS06705 0.38 -0.4
1,365,824 + A4249_RS06705 0.56 -0.5
1,365,825 - A4249_RS06705 0.56 +0.3
1,365,825 - A4249_RS06705 0.56 +1.5
1,365,825 - A4249_RS06705 0.56 -0.7
1,365,825 - A4249_RS06705 0.56 +1.1
1,365,825 - A4249_RS06705 0.56 +0.1

Or see this region's nucleotide sequence