Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06485

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06475 and A4249_RS06480 are separated by 194 nucleotidesA4249_RS06480 and A4249_RS06485 are separated by 3 nucleotidesA4249_RS06485 and A4249_RS06490 are separated by 73 nucleotidesA4249_RS06490 and A4249_RS06495 are separated by 93 nucleotides A4249_RS06475: A4249_RS06475 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,318,706 to 1,319,974 _RS06475 A4249_RS06480: A4249_RS06480 - HAD-IB family hydrolase, at 1,320,169 to 1,320,816 _RS06480 A4249_RS06485: A4249_RS06485 - hypothetical protein, at 1,320,820 to 1,321,140 _RS06485 A4249_RS06490: A4249_RS06490 - ATP-dependent Clp protease proteolytic subunit, at 1,321,214 to 1,321,861 _RS06490 A4249_RS06495: A4249_RS06495 - hypothetical protein, at 1,321,955 to 1,322,860 _RS06495 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -2 -1 0 1 2at 1319.975 kb on - strandat 1320.183 kb on + strandat 1320.183 kb on + strandat 1320.183 kb on + strandat 1320.197 kb on + strandat 1320.198 kb on - strandat 1320.707 kb on - strand, within A4249_RS06480at 1320.821 kb on + strandat 1320.821 kb on + strandat 1320.821 kb on + strandat 1320.822 kb on - strandat 1320.822 kb on - strandat 1320.822 kb on - strandat 1320.822 kb on - strandat 1321.088 kb on + strand, within A4249_RS06485at 1321.088 kb on + strand, within A4249_RS06485at 1321.088 kb on + strand, within A4249_RS06485at 1321.089 kb on - strand, within A4249_RS06485at 1321.089 kb on - strand, within A4249_RS06485at 1321.089 kb on - strand, within A4249_RS06485at 1321.215 kb on + strandat 1321.215 kb on + strandat 1321.216 kb on - strandat 1321.216 kb on - strandat 1321.216 kb on - strandat 1321.216 kb on - strandat 1321.233 kb on - strandat 1321.910 kb on - strandat 1322.007 kb on - strandat 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.067 kb on + strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.068 kb on - strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.069 kb on + strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.070 kb on - strand, within A4249_RS06495at 1322.082 kb on + strand, within A4249_RS06495at 1322.082 kb on + strand, within A4249_RS06495

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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1,319,975 - +0.4
1,320,183 + +0.6
1,320,183 + -0.2
1,320,183 + -0.8
1,320,197 + +0.9
1,320,198 - -0.3
1,320,707 - A4249_RS06480 0.83 -0.6
1,320,821 + -1.1
1,320,821 + +0.3
1,320,821 + -1.2
1,320,822 - +0.7
1,320,822 - -0.5
1,320,822 - -0.2
1,320,822 - -0.1
1,321,088 + A4249_RS06485 0.83 -0.4
1,321,088 + A4249_RS06485 0.83 -0.8
1,321,088 + A4249_RS06485 0.83 -0.1
1,321,089 - A4249_RS06485 0.84 -0.0
1,321,089 - A4249_RS06485 0.84 +0.4
1,321,089 - A4249_RS06485 0.84 +0.1
1,321,215 + -0.2
1,321,215 + +1.8
1,321,216 - -0.3
1,321,216 - -0.3
1,321,216 - -1.0
1,321,216 - +1.1
1,321,233 - +0.9
1,321,910 - -0.5
1,322,007 - +0.4
1,322,067 + A4249_RS06495 0.12 +0.5
1,322,067 + A4249_RS06495 0.12 -0.2
1,322,067 + A4249_RS06495 0.12 +0.4
1,322,067 + A4249_RS06495 0.12 -0.2
1,322,067 + A4249_RS06495 0.12 +0.3
1,322,067 + A4249_RS06495 0.12 +0.4
1,322,067 + A4249_RS06495 0.12 -1.3
1,322,067 + A4249_RS06495 0.12 +1.5
1,322,068 - A4249_RS06495 0.12 +0.2
1,322,068 - A4249_RS06495 0.12 -0.1
1,322,068 - A4249_RS06495 0.12 -1.1
1,322,068 - A4249_RS06495 0.12 -1.8
1,322,068 - A4249_RS06495 0.12 -0.4
1,322,068 - A4249_RS06495 0.12 -0.4
1,322,068 - A4249_RS06495 0.12 -0.1
1,322,068 - A4249_RS06495 0.12 +0.3
1,322,068 - A4249_RS06495 0.12 +0.1
1,322,068 - A4249_RS06495 0.12 +0.3
1,322,068 - A4249_RS06495 0.12 -0.2
1,322,068 - A4249_RS06495 0.12 -0.4
1,322,068 - A4249_RS06495 0.12 +0.7
1,322,068 - A4249_RS06495 0.12 +0.2
1,322,068 - A4249_RS06495 0.12 -0.3
1,322,069 + A4249_RS06495 0.13 +0.1
1,322,069 + A4249_RS06495 0.13 -0.2
1,322,069 + A4249_RS06495 0.13 -0.6
1,322,069 + A4249_RS06495 0.13 -1.4
1,322,069 + A4249_RS06495 0.13 +0.8
1,322,069 + A4249_RS06495 0.13 -0.2
1,322,069 + A4249_RS06495 0.13 +0.8
1,322,069 + A4249_RS06495 0.13 +0.7
1,322,069 + A4249_RS06495 0.13 +0.7
1,322,070 - A4249_RS06495 0.13 -0.2
1,322,070 - A4249_RS06495 0.13 +0.2
1,322,070 - A4249_RS06495 0.13 -1.0
1,322,070 - A4249_RS06495 0.13 +0.6
1,322,070 - A4249_RS06495 0.13 -0.5
1,322,070 - A4249_RS06495 0.13 +1.6
1,322,070 - A4249_RS06495 0.13 +0.2
1,322,070 - A4249_RS06495 0.13 -0.6
1,322,070 - A4249_RS06495 0.13 -0.2
1,322,070 - A4249_RS06495 0.13 -0.1
1,322,082 + A4249_RS06495 0.14 +0.1
1,322,082 + A4249_RS06495 0.14 -0.3

Or see this region's nucleotide sequence