Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02740

Experiment: Xanthine 0.6574 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02735 and A4249_RS02740 are separated by 140 nucleotidesA4249_RS02740 and A4249_RS02745 are separated by 111 nucleotidesA4249_RS02745 and A4249_RS02750 are separated by 84 nucleotides A4249_RS02735: A4249_RS02735 - flagellin, at 580,518 to 581,261 _RS02735 A4249_RS02740: A4249_RS02740 - flagellin, at 581,402 to 582,205 _RS02740 A4249_RS02745: A4249_RS02745 - flagellin, at 582,317 to 583,054 _RS02745 A4249_RS02750: A4249_RS02750 - hypothetical protein, at 583,139 to 583,420 _RS02750 Position (kb) 581 582 583Strain fitness (log2 ratio) -2 -1 0 1at 580.403 kb on + strandat 580.445 kb on + strandat 580.445 kb on + strandat 580.445 kb on + strandat 580.446 kb on - strandat 580.446 kb on - strandat 580.709 kb on + strand, within A4249_RS02735at 580.710 kb on - strand, within A4249_RS02735at 580.710 kb on - strand, within A4249_RS02735at 580.710 kb on - strand, within A4249_RS02735at 580.710 kb on - strand, within A4249_RS02735at 580.848 kb on + strand, within A4249_RS02735at 580.848 kb on + strand, within A4249_RS02735at 580.848 kb on + strand, within A4249_RS02735at 580.849 kb on - strand, within A4249_RS02735at 580.849 kb on - strand, within A4249_RS02735at 581.417 kb on - strandat 581.417 kb on - strandat 581.417 kb on - strandat 581.417 kb on - strandat 581.424 kb on - strandat 581.424 kb on - strandat 581.726 kb on + strand, within A4249_RS02740at 581.726 kb on + strand, within A4249_RS02740at 581.727 kb on - strand, within A4249_RS02740at 581.727 kb on - strand, within A4249_RS02740at 581.855 kb on + strand, within A4249_RS02740at 581.855 kb on + strand, within A4249_RS02740at 581.855 kb on + strand, within A4249_RS02740at 581.856 kb on - strand, within A4249_RS02740at 581.856 kb on - strand, within A4249_RS02740at 581.856 kb on - strand, within A4249_RS02740at 581.908 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.936 kb on + strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 581.937 kb on - strand, within A4249_RS02740at 582.183 kb on + strandat 582.204 kb on - strandat 582.313 kb on - strandat 582.332 kb on - strandat 582.332 kb on - strandat 582.338 kb on + strandat 582.338 kb on + strandat 582.339 kb on - strandat 582.339 kb on - strandat 582.641 kb on + strand, within A4249_RS02745at 582.641 kb on + strand, within A4249_RS02745at 582.642 kb on - strand, within A4249_RS02745at 582.642 kb on - strand, within A4249_RS02745at 582.642 kb on - strand, within A4249_RS02745at 582.653 kb on + strand, within A4249_RS02745at 582.653 kb on + strand, within A4249_RS02745at 582.653 kb on + strand, within A4249_RS02745at 582.654 kb on - strand, within A4249_RS02745at 582.654 kb on - strand, within A4249_RS02745at 582.654 kb on - strand, within A4249_RS02745at 582.654 kb on - strand, within A4249_RS02745at 583.052 kb on + strandat 583.107 kb on + strandat 583.107 kb on + strandat 583.107 kb on + strandat 583.108 kb on - strandat 583.108 kb on - strandat 583.108 kb on - strandat 583.108 kb on - strandat 583.108 kb on - strandat 583.108 kb on - strandat 583.164 kb on + strandat 583.164 kb on + strandat 583.164 kb on + strandat 583.165 kb on - strandat 583.165 kb on - strandat 583.165 kb on - strandat 583.165 kb on - strandat 583.170 kb on + strand, within A4249_RS02750at 583.170 kb on + strand, within A4249_RS02750at 583.170 kb on + strand, within A4249_RS02750at 583.171 kb on - strand, within A4249_RS02750at 583.171 kb on - strand, within A4249_RS02750at 583.171 kb on - strand, within A4249_RS02750at 583.171 kb on - strand, within A4249_RS02750

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthine 0.6574 mM (C)
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580,403 + -0.6
580,445 + -0.0
580,445 + -0.0
580,445 + -0.4
580,446 - +0.3
580,446 - -1.6
580,709 + A4249_RS02735 0.26 +0.6
580,710 - A4249_RS02735 0.26 +0.3
580,710 - A4249_RS02735 0.26 +0.6
580,710 - A4249_RS02735 0.26 -0.5
580,710 - A4249_RS02735 0.26 +0.2
580,848 + A4249_RS02735 0.44 +0.2
580,848 + A4249_RS02735 0.44 +0.6
580,848 + A4249_RS02735 0.44 -0.2
580,849 - A4249_RS02735 0.44 +0.5
580,849 - A4249_RS02735 0.44 -2.2
581,417 - -0.2
581,417 - +0.3
581,417 - -0.1
581,417 - +0.4
581,424 - -0.2
581,424 - -0.0
581,726 + A4249_RS02740 0.40 +0.0
581,726 + A4249_RS02740 0.40 -0.5
581,727 - A4249_RS02740 0.40 -1.5
581,727 - A4249_RS02740 0.40 +0.0
581,855 + A4249_RS02740 0.56 -0.0
581,855 + A4249_RS02740 0.56 -0.6
581,855 + A4249_RS02740 0.56 +0.5
581,856 - A4249_RS02740 0.56 +0.0
581,856 - A4249_RS02740 0.56 -1.1
581,856 - A4249_RS02740 0.56 +0.7
581,908 + A4249_RS02740 0.63 +0.2
581,936 + A4249_RS02740 0.66 -0.2
581,936 + A4249_RS02740 0.66 -0.0
581,936 + A4249_RS02740 0.66 -0.1
581,936 + A4249_RS02740 0.66 +0.7
581,936 + A4249_RS02740 0.66 -0.6
581,936 + A4249_RS02740 0.66 -0.6
581,937 - A4249_RS02740 0.67 -0.3
581,937 - A4249_RS02740 0.67 -0.3
581,937 - A4249_RS02740 0.67 -1.8
581,937 - A4249_RS02740 0.67 -0.8
581,937 - A4249_RS02740 0.67 -0.1
581,937 - A4249_RS02740 0.67 -0.9
582,183 + -0.4
582,204 - -0.8
582,313 - -0.3
582,332 - -0.1
582,332 - +0.1
582,338 + +0.2
582,338 + +0.2
582,339 - -0.5
582,339 - -1.5
582,641 + A4249_RS02745 0.44 +0.7
582,641 + A4249_RS02745 0.44 -0.2
582,642 - A4249_RS02745 0.44 +0.2
582,642 - A4249_RS02745 0.44 +0.1
582,642 - A4249_RS02745 0.44 -0.0
582,653 + A4249_RS02745 0.46 -0.1
582,653 + A4249_RS02745 0.46 +0.2
582,653 + A4249_RS02745 0.46 -0.5
582,654 - A4249_RS02745 0.46 +0.4
582,654 - A4249_RS02745 0.46 +0.8
582,654 - A4249_RS02745 0.46 -0.3
582,654 - A4249_RS02745 0.46 -0.2
583,052 + -0.2
583,107 + +0.3
583,107 + +0.6
583,107 + +0.0
583,108 - -0.6
583,108 - -0.6
583,108 - -0.4
583,108 - +0.4
583,108 - +0.1
583,108 - -1.1
583,164 + +0.6
583,164 + +0.4
583,164 + -1.0
583,165 - -1.0
583,165 - +1.3
583,165 - -0.1
583,165 - -0.3
583,170 + A4249_RS02750 0.11 +0.7
583,170 + A4249_RS02750 0.11 +1.3
583,170 + A4249_RS02750 0.11 -0.6
583,171 - A4249_RS02750 0.11 -0.6
583,171 - A4249_RS02750 0.11 -0.8
583,171 - A4249_RS02750 0.11 -0.5
583,171 - A4249_RS02750 0.11 +0.2

Or see this region's nucleotide sequence