Strain Fitness in Variovorax sp. SCN45 around GFF920

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF919 and GFF920 are separated by 20 nucleotidesGFF920 and GFF921 are separated by 47 nucleotides GFF919 - hypothetical protein, at 231,776 to 232,744 GFF919 GFF920 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 232,765 to 233,994 GFF920 GFF921 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 234,042 to 235,331 GFF921 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.911 kb on + strand, within GFF919at 231.912 kb on - strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.322 kb on + strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.443 kb on - strand, within GFF919at 233.089 kb on + strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.099 kb on - strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.303 kb on - strand, within GFF920at 233.383 kb on + strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.458 kb on + strand, within GFF920at 233.472 kb on + strand, within GFF920at 234.301 kb on - strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.822 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.946 kb on - strand, within GFF921

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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231,881 + GFF919 0.11 -0.1
231,881 + GFF919 0.11 -0.7
231,881 + GFF919 0.11 -0.1
231,881 + GFF919 0.11 +0.9
231,881 + GFF919 0.11 +1.4
231,882 - GFF919 0.11 -1.8
231,882 - GFF919 0.11 -0.2
231,882 - GFF919 0.11 -0.1
231,911 + GFF919 0.14 -0.6
231,912 - GFF919 0.14 -0.5
232,040 + GFF919 0.27 -1.0
232,040 + GFF919 0.27 -0.3
232,040 + GFF919 0.27 +0.7
232,115 + GFF919 0.35 +0.1
232,115 + GFF919 0.35 +0.8
232,115 + GFF919 0.35 +0.1
232,115 + GFF919 0.35 -0.4
232,115 + GFF919 0.35 -0.4
232,115 + GFF919 0.35 +1.2
232,115 + GFF919 0.35 -0.3
232,115 + GFF919 0.35 -1.7
232,116 - GFF919 0.35 +0.1
232,116 - GFF919 0.35 -1.2
232,190 + GFF919 0.43 +0.5
232,190 + GFF919 0.43 -0.0
232,190 + GFF919 0.43 -0.2
232,190 + GFF919 0.43 -1.6
232,191 - GFF919 0.43 -1.5
232,191 - GFF919 0.43 +0.3
232,191 - GFF919 0.43 -0.6
232,191 - GFF919 0.43 +0.0
232,191 - GFF919 0.43 -1.4
232,191 - GFF919 0.43 -0.6
232,191 - GFF919 0.43 -1.0
232,191 - GFF919 0.43 -0.7
232,265 + GFF919 0.50 -0.5
232,265 + GFF919 0.50 -0.5
232,265 + GFF919 0.50 +2.4
232,266 - GFF919 0.51 -0.3
232,266 - GFF919 0.51 -0.7
232,322 + GFF919 0.56 +1.4
232,323 - GFF919 0.56 -0.4
232,323 - GFF919 0.56 +0.7
232,323 - GFF919 0.56 -0.5
232,443 - GFF919 0.69 -0.0
233,089 + GFF920 0.26 -0.7
233,090 - GFF920 0.26 +0.1
233,090 - GFF920 0.26 -2.4
233,099 - GFF920 0.27 -0.0
233,224 + GFF920 0.37 -1.2
233,224 + GFF920 0.37 -0.1
233,224 + GFF920 0.37 +0.6
233,303 - GFF920 0.44 -1.2
233,383 + GFF920 0.50 +0.4
233,384 - GFF920 0.50 -0.6
233,384 - GFF920 0.50 -0.9
233,458 + GFF920 0.56 -0.5
233,472 + GFF920 0.57 -0.7
234,301 - GFF921 0.20 +0.9
234,309 + GFF921 0.21 +0.3
234,309 + GFF921 0.21 -0.8
234,309 + GFF921 0.21 +0.4
234,310 - GFF921 0.21 -0.4
234,310 - GFF921 0.21 +1.4
234,310 - GFF921 0.21 +0.0
234,310 - GFF921 0.21 +0.5
234,310 - GFF921 0.21 -1.0
234,310 - GFF921 0.21 -1.3
234,516 + GFF921 0.37 -0.2
234,516 + GFF921 0.37 +0.3
234,516 + GFF921 0.37 -0.3
234,516 + GFF921 0.37 +0.4
234,517 - GFF921 0.37 +0.2
234,517 - GFF921 0.37 -0.2
234,517 - GFF921 0.37 +0.1
234,517 - GFF921 0.37 -0.6
234,696 + GFF921 0.51 -0.8
234,696 + GFF921 0.51 -0.2
234,696 + GFF921 0.51 -0.0
234,696 + GFF921 0.51 -0.2
234,696 + GFF921 0.51 -0.6
234,696 + GFF921 0.51 +0.4
234,696 + GFF921 0.51 -0.4
234,696 + GFF921 0.51 -0.4
234,697 - GFF921 0.51 -1.3
234,697 - GFF921 0.51 -0.5
234,697 - GFF921 0.51 -0.6
234,697 - GFF921 0.51 +0.1
234,697 - GFF921 0.51 -1.3
234,697 - GFF921 0.51 -0.7
234,697 - GFF921 0.51 +0.1
234,697 - GFF921 0.51 +1.7
234,697 - GFF921 0.51 -0.3
234,697 - GFF921 0.51 -0.0
234,822 + GFF921 0.60 -0.7
234,945 + GFF921 0.70 +0.2
234,945 + GFF921 0.70 +0.4
234,946 - GFF921 0.70 -0.2

Or see this region's nucleotide sequence