Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF885 and GFF886 are separated by 69 nucleotides GFF886 and GFF887 overlap by 4 nucleotides GFF887 and GFF888 are separated by 49 nucleotides
GFF885 - Transcriptional regulator, LysR family, at 194,288 to 195,205
GFF885
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
GFF887 - Small uncharacterized protein Bpro_4170, at 196,696 to 197,064
GFF887
GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079
GFF888
Position (kb) 195
196
197 Strain fitness (log2 ratio) -1
0
1 at 194.331 kb on + strand at 194.331 kb on + strand at 194.382 kb on + strand, within GFF885 at 194.382 kb on + strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.613 kb on + strand, within GFF885 at 195.231 kb on + strand at 195.232 kb on - strand at 195.258 kb on + strand at 195.271 kb on - strand at 195.291 kb on + strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.785 kb on + strand, within GFF886 at 195.786 kb on - strand, within GFF886 at 195.983 kb on + strand, within GFF886 at 196.002 kb on - strand, within GFF886 at 196.136 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.326 kb on - strand, within GFF886 at 196.565 kb on + strand at 196.565 kb on + strand at 196.565 kb on + strand at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 197.370 kb on - strand, within GFF888 at 197.567 kb on + strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.655 kb on - strand, within GFF888
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 194,331 + -0.4 194,331 + -0.6 194,382 + GFF885 0.10 +1.1 194,382 + GFF885 0.10 -0.0 194,383 - GFF885 0.10 +0.5 194,383 - GFF885 0.10 -0.2 194,613 + GFF885 0.35 -0.0 195,231 + +0.1 195,232 - -0.9 195,258 + -0.6 195,271 - -0.3 195,291 + -1.2 195,292 - +0.2 195,292 - -0.2 195,292 - +0.1 195,292 - -0.5 195,292 - -0.9 195,785 + GFF886 0.36 -0.1 195,786 - GFF886 0.36 -0.6 195,983 + GFF886 0.50 -0.3 196,002 - GFF886 0.51 +0.1 196,136 + GFF886 0.60 -1.4 196,271 + GFF886 0.70 -0.9 196,271 + GFF886 0.70 -0.3 196,271 + GFF886 0.70 -0.7 196,271 + GFF886 0.70 -0.6 196,271 + GFF886 0.70 -0.2 196,271 + GFF886 0.70 -1.4 196,272 - GFF886 0.70 -0.4 196,272 - GFF886 0.70 -0.2 196,326 - GFF886 0.74 +0.4 196,565 + -1.5 196,565 + -1.2 196,565 + -1.1 196,886 + GFF887 0.51 +0.6 196,886 + GFF887 0.51 -0.8 196,886 + GFF887 0.51 -0.1 196,887 - GFF887 0.52 +0.3 196,887 - GFF887 0.52 -0.6 197,370 - GFF888 0.27 +0.4 197,567 + GFF888 0.47 +1.4 197,568 - GFF888 0.47 -0.4 197,568 - GFF888 0.47 +0.4 197,654 + GFF888 0.56 +0.3 197,654 + GFF888 0.56 -0.5 197,655 - GFF888 0.56 -0.2
Or see this region's nucleotide sequence