Strain Fitness in Variovorax sp. SCN45 around GFF87

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF85 and GFF86 are separated by 41 nucleotidesGFF86 and GFF87 overlap by 4 nucleotidesGFF87 and GFF88 are separated by 7 nucleotides GFF85 - Transcriptional regulator, LysR family, at 101,576 to 102,475 GFF85 GFF86 - Cell morphology protein, at 102,517 to 103,191 GFF86 GFF87 - no description, at 103,188 to 103,868 GFF87 GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270 GFF88 Position (kb) 103 104Strain fitness (log2 ratio) -2 -1 0 1at 102.444 kb on + strandat 102.444 kb on + strandat 102.482 kb on + strandat 102.483 kb on - strandat 102.483 kb on - strandat 102.589 kb on + strand, within GFF86at 102.590 kb on - strand, within GFF86at 102.590 kb on - strand, within GFF86at 102.590 kb on - strand, within GFF86at 102.590 kb on - strand, within GFF86at 102.590 kb on - strand, within GFF86at 102.670 kb on + strand, within GFF86at 102.968 kb on - strand, within GFF86at 102.980 kb on - strand, within GFF86at 102.980 kb on - strand, within GFF86at 103.273 kb on - strand, within GFF87at 103.273 kb on - strand, within GFF87at 103.405 kb on - strand, within GFF87at 103.602 kb on + strand, within GFF87at 103.602 kb on + strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.934 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 103.993 kb on + strandat 103.993 kb on + strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 104.138 kb on + strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.150 kb on - strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.273 kb on - strand, within GFF88at 104.273 kb on - strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.569 kb on + strand, within GFF88at 104.570 kb on - strand, within GFF88at 104.570 kb on - strand, within GFF88at 104.604 kb on + strand, within GFF88at 104.604 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.740 kb on + strand, within GFF88at 104.741 kb on - strand, within GFF88at 104.741 kb on - strand, within GFF88at 104.746 kb on + strand, within GFF88at 104.857 kb on + strand, within GFF88

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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102,444 + -0.3
102,444 + -0.8
102,482 + -0.1
102,483 - -0.2
102,483 - -1.3
102,589 + GFF86 0.11 -0.7
102,590 - GFF86 0.11 -2.2
102,590 - GFF86 0.11 -0.1
102,590 - GFF86 0.11 -1.5
102,590 - GFF86 0.11 -0.4
102,590 - GFF86 0.11 -0.4
102,670 + GFF86 0.23 -0.3
102,968 - GFF86 0.67 -0.6
102,980 - GFF86 0.69 -0.7
102,980 - GFF86 0.69 -0.1
103,273 - GFF87 0.12 +0.3
103,273 - GFF87 0.12 -0.5
103,405 - GFF87 0.32 -1.1
103,602 + GFF87 0.61 -0.6
103,602 + GFF87 0.61 -1.2
103,603 - GFF87 0.61 +0.7
103,603 - GFF87 0.61 -0.3
103,603 - GFF87 0.61 -0.8
103,934 - +0.3
103,934 - +1.7
103,934 - +0.0
103,993 + -0.6
103,993 + -0.0
103,994 - -0.5
103,994 - -1.0
103,994 - +0.4
103,994 - -0.4
103,994 - -0.4
104,138 + GFF88 0.19 +0.6
104,139 - GFF88 0.19 -0.4
104,139 - GFF88 0.19 -0.4
104,139 - GFF88 0.19 +0.8
104,139 - GFF88 0.19 -0.3
104,139 - GFF88 0.19 +0.4
104,139 - GFF88 0.19 -0.1
104,139 - GFF88 0.19 -0.3
104,150 - GFF88 0.20 -0.4
104,272 + GFF88 0.28 -0.3
104,272 + GFF88 0.28 -0.3
104,272 + GFF88 0.28 -0.2
104,273 - GFF88 0.28 -0.3
104,273 - GFF88 0.28 +1.3
104,335 + GFF88 0.33 -1.2
104,335 + GFF88 0.33 +0.7
104,335 + GFF88 0.33 -0.5
104,335 + GFF88 0.33 -1.2
104,336 - GFF88 0.33 -0.0
104,336 - GFF88 0.33 -0.2
104,336 - GFF88 0.33 -0.5
104,336 - GFF88 0.33 -0.4
104,569 + GFF88 0.50 -1.1
104,570 - GFF88 0.50 +0.0
104,570 - GFF88 0.50 -0.4
104,604 + GFF88 0.52 -0.6
104,604 + GFF88 0.52 -0.3
104,712 + GFF88 0.60 -2.2
104,712 + GFF88 0.60 -0.5
104,712 + GFF88 0.60 +0.1
104,713 - GFF88 0.60 +0.3
104,713 - GFF88 0.60 -0.7
104,713 - GFF88 0.60 -1.9
104,713 - GFF88 0.60 -0.5
104,740 + GFF88 0.62 -1.7
104,741 - GFF88 0.62 -0.1
104,741 - GFF88 0.62 +1.1
104,746 + GFF88 0.62 -1.2
104,857 + GFF88 0.70 -0.3

Or see this region's nucleotide sequence