Strain Fitness in Variovorax sp. SCN45 around GFF836

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF835 and GFF836 overlap by 4 nucleotidesGFF836 and GFF837 are separated by 34 nucleotidesGFF837 and GFF838 overlap by 4 nucleotides GFF835 - Two-component system sensor histidine kinase, at 140,351 to 141,631 GFF835 GFF836 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 141,628 to 142,569 GFF836 GFF837 - FIG01002808: hypothetical protein, at 142,604 to 143,455 GFF837 GFF838 - hypothetical protein, at 143,452 to 144,552 GFF838 Position (kb) 141 142 143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 140.843 kb on + strand, within GFF835at 140.843 kb on + strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 141.180 kb on + strand, within GFF835at 141.181 kb on - strand, within GFF835at 141.181 kb on - strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.232 kb on - strand, within GFF835at 141.258 kb on + strand, within GFF835at 141.258 kb on + strand, within GFF835at 141.258 kb on + strand, within GFF835at 141.503 kb on + strand, within GFF835at 141.503 kb on + strand, within GFF835at 141.504 kb on - strandat 141.504 kb on - strandat 141.504 kb on - strandat 141.594 kb on + strandat 141.594 kb on + strandat 141.594 kb on + strandat 141.594 kb on + strandat 141.594 kb on + strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.595 kb on - strandat 141.983 kb on + strand, within GFF836at 141.984 kb on - strand, within GFF836at 142.605 kb on + strandat 142.605 kb on + strandat 142.605 kb on + strandat 142.606 kb on - strandat 142.758 kb on + strand, within GFF837at 142.758 kb on + strand, within GFF837at 142.759 kb on - strand, within GFF837at 142.759 kb on - strand, within GFF837at 142.782 kb on + strand, within GFF837at 142.782 kb on + strand, within GFF837at 143.278 kb on - strand, within GFF837at 143.319 kb on + strand, within GFF837at 143.319 kb on + strand, within GFF837at 143.319 kb on + strand, within GFF837at 143.319 kb on + strand, within GFF837at 143.320 kb on - strand, within GFF837at 143.361 kb on + strand, within GFF837at 143.361 kb on + strand, within GFF837at 143.361 kb on + strand, within GFF837at 143.361 kb on + strand, within GFF837at 143.362 kb on - strand, within GFF837at 143.362 kb on - strand, within GFF837at 143.362 kb on - strand, within GFF837at 143.495 kb on + strandat 143.496 kb on - strandat 143.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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140,843 + GFF835 0.38 +0.0
140,843 + GFF835 0.38 +0.4
140,844 - GFF835 0.38 +0.1
140,844 - GFF835 0.38 +0.1
140,844 - GFF835 0.38 -0.3
140,844 - GFF835 0.38 +1.9
141,180 + GFF835 0.65 -0.2
141,181 - GFF835 0.65 -0.8
141,181 - GFF835 0.65 +0.6
141,214 + GFF835 0.67 -0.9
141,214 + GFF835 0.67 -0.8
141,214 + GFF835 0.67 +0.2
141,214 + GFF835 0.67 -0.1
141,215 - GFF835 0.67 -0.6
141,215 - GFF835 0.67 +3.0
141,215 - GFF835 0.67 -0.4
141,215 - GFF835 0.67 +0.4
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 +1.0
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 +0.8
141,215 - GFF835 0.67 -0.1
141,216 + GFF835 0.68 +0.6
141,216 + GFF835 0.68 -0.5
141,216 + GFF835 0.68 +0.4
141,216 + GFF835 0.68 -2.3
141,216 + GFF835 0.68 -0.8
141,216 + GFF835 0.68 -0.3
141,216 + GFF835 0.68 -1.4
141,216 + GFF835 0.68 +0.2
141,216 + GFF835 0.68 +0.4
141,216 + GFF835 0.68 +1.0
141,216 + GFF835 0.68 -0.2
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 -1.4
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 -1.2
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 +0.8
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 -0.1
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 -0.4
141,217 - GFF835 0.68 -1.3
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 +0.0
141,217 - GFF835 0.68 -1.4
141,217 - GFF835 0.68 -1.2
141,217 - GFF835 0.68 -2.0
141,217 - GFF835 0.68 -0.2
141,217 - GFF835 0.68 -0.1
141,231 + GFF835 0.69 -1.8
141,231 + GFF835 0.69 -0.6
141,231 + GFF835 0.69 -0.1
141,231 + GFF835 0.69 -0.1
141,231 + GFF835 0.69 -0.8
141,232 - GFF835 0.69 +0.1
141,258 + GFF835 0.71 -0.1
141,258 + GFF835 0.71 -0.1
141,258 + GFF835 0.71 -0.4
141,503 + GFF835 0.90 -0.5
141,503 + GFF835 0.90 +0.1
141,504 - +1.1
141,504 - -1.4
141,504 - +0.5
141,594 + -0.6
141,594 + -0.7
141,594 + +0.0
141,594 + -0.3
141,594 + +1.2
141,595 - -0.7
141,595 - +2.4
141,595 - -0.8
141,595 - -1.2
141,595 - -1.0
141,595 - -1.6
141,595 - -0.4
141,983 + GFF836 0.38 +0.6
141,984 - GFF836 0.38 +0.1
142,605 + -0.6
142,605 + -0.6
142,605 + +0.0
142,606 - +0.1
142,758 + GFF837 0.18 -0.6
142,758 + GFF837 0.18 +0.3
142,759 - GFF837 0.18 +0.7
142,759 - GFF837 0.18 -1.2
142,782 + GFF837 0.21 +0.1
142,782 + GFF837 0.21 +0.0
143,278 - GFF837 0.79 -0.2
143,319 + GFF837 0.84 +0.2
143,319 + GFF837 0.84 -0.3
143,319 + GFF837 0.84 -0.4
143,319 + GFF837 0.84 +0.5
143,320 - GFF837 0.84 -1.0
143,361 + GFF837 0.89 +0.5
143,361 + GFF837 0.89 +0.8
143,361 + GFF837 0.89 +0.4
143,361 + GFF837 0.89 -0.8
143,362 - GFF837 0.89 -1.8
143,362 - GFF837 0.89 +0.5
143,362 - GFF837 0.89 -0.2
143,495 + -0.4
143,496 - -1.2
143,525 + -0.9

Or see this region's nucleotide sequence