Strain Fitness in Variovorax sp. SCN45 around GFF834

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF831 and GFF832 are separated by 42 nucleotidesGFF832 and GFF833 are separated by 16 nucleotidesGFF833 and GFF834 are separated by 13 nucleotidesGFF834 and GFF835 are separated by 6 nucleotides GFF831 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 138,168 to 138,581 GFF831 GFF832 - hypothetical protein, at 138,624 to 138,956 GFF832 GFF833 - Proteins containing SET domain, at 138,973 to 139,461 GFF833 GFF834 - hypothetical protein, at 139,475 to 140,344 GFF834 GFF835 - Two-component system sensor histidine kinase, at 140,351 to 141,631 GFF835 Position (kb) 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 138.568 kb on - strandat 138.579 kb on + strandat 138.580 kb on - strandat 138.614 kb on - strandat 138.974 kb on + strandat 138.975 kb on - strandat 138.975 kb on - strandat 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.053 kb on - strand, within GFF833at 139.091 kb on + strand, within GFF833at 139.091 kb on + strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.169 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.325 kb on + strand, within GFF833at 139.326 kb on - strand, within GFF833at 139.340 kb on + strand, within GFF833at 139.340 kb on + strand, within GFF833at 139.341 kb on - strand, within GFF833at 139.341 kb on - strand, within GFF833at 139.725 kb on + strand, within GFF834at 139.726 kb on - strand, within GFF834at 139.751 kb on + strand, within GFF834at 139.751 kb on + strand, within GFF834at 140.110 kb on - strand, within GFF834at 140.253 kb on + strand, within GFF834at 140.253 kb on + strand, within GFF834at 140.253 kb on + strand, within GFF834at 140.254 kb on - strand, within GFF834at 140.263 kb on - strandat 140.417 kb on - strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.451 kb on + strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.452 kb on - strandat 140.503 kb on - strand, within GFF835at 140.843 kb on + strand, within GFF835at 140.843 kb on + strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 140.844 kb on - strand, within GFF835at 141.180 kb on + strand, within GFF835at 141.181 kb on - strand, within GFF835at 141.181 kb on - strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.214 kb on + strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.215 kb on - strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.216 kb on + strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.217 kb on - strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.231 kb on + strand, within GFF835at 141.232 kb on - strand, within GFF835at 141.258 kb on + strand, within GFF835at 141.258 kb on + strand, within GFF835at 141.258 kb on + strand, within GFF835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
138,568 - -1.3
138,579 + -0.3
138,580 - +1.0
138,614 - +1.4
138,974 + +0.1
138,975 - +0.3
138,975 - -0.8
139,052 + GFF833 0.16 +0.0
139,052 + GFF833 0.16 -0.8
139,052 + GFF833 0.16 -0.4
139,052 + GFF833 0.16 -1.8
139,052 + GFF833 0.16 -0.4
139,052 + GFF833 0.16 -0.6
139,053 - GFF833 0.16 +0.5
139,091 + GFF833 0.24 +0.0
139,091 + GFF833 0.24 -0.4
139,092 - GFF833 0.24 +0.5
139,092 - GFF833 0.24 -1.2
139,092 - GFF833 0.24 -0.0
139,169 + GFF833 0.40 +0.4
139,277 + GFF833 0.62 -0.5
139,277 + GFF833 0.62 +2.1
139,277 + GFF833 0.62 +0.0
139,277 + GFF833 0.62 -1.3
139,277 + GFF833 0.62 -0.4
139,277 + GFF833 0.62 +0.4
139,277 + GFF833 0.62 -0.1
139,277 + GFF833 0.62 +0.1
139,277 + GFF833 0.62 +0.7
139,277 + GFF833 0.62 +1.8
139,277 + GFF833 0.62 +0.5
139,277 + GFF833 0.62 -0.6
139,278 - GFF833 0.62 +0.7
139,278 - GFF833 0.62 -0.5
139,278 - GFF833 0.62 -0.4
139,278 - GFF833 0.62 -1.1
139,278 - GFF833 0.62 -0.4
139,278 - GFF833 0.62 +0.2
139,278 - GFF833 0.62 -0.2
139,278 - GFF833 0.62 +1.0
139,278 - GFF833 0.62 -0.8
139,325 + GFF833 0.72 -1.5
139,326 - GFF833 0.72 -0.1
139,340 + GFF833 0.75 -1.0
139,340 + GFF833 0.75 -0.3
139,341 - GFF833 0.75 -0.9
139,341 - GFF833 0.75 +0.3
139,725 + GFF834 0.29 +0.2
139,726 - GFF834 0.29 +0.3
139,751 + GFF834 0.32 +0.6
139,751 + GFF834 0.32 +0.0
140,110 - GFF834 0.73 +0.5
140,253 + GFF834 0.89 +0.6
140,253 + GFF834 0.89 +0.1
140,253 + GFF834 0.89 -0.2
140,254 - GFF834 0.90 -0.4
140,263 - -0.3
140,417 - -0.4
140,451 + +1.0
140,451 + -0.2
140,451 + -0.4
140,451 + -0.9
140,451 + -0.3
140,451 + +0.1
140,451 + +0.2
140,451 + -1.2
140,451 + -1.0
140,451 + -0.3
140,452 - -1.2
140,452 - -0.8
140,452 - -1.0
140,452 - -0.9
140,452 - +0.4
140,452 - -0.8
140,452 - -0.1
140,452 - -0.1
140,452 - -0.9
140,452 - -0.4
140,452 - +0.3
140,452 - +1.4
140,503 - GFF835 0.12 -1.0
140,843 + GFF835 0.38 +0.0
140,843 + GFF835 0.38 +0.4
140,844 - GFF835 0.38 +0.1
140,844 - GFF835 0.38 +0.1
140,844 - GFF835 0.38 -0.3
140,844 - GFF835 0.38 +1.9
141,180 + GFF835 0.65 -0.2
141,181 - GFF835 0.65 -0.8
141,181 - GFF835 0.65 +0.6
141,214 + GFF835 0.67 -0.9
141,214 + GFF835 0.67 -0.8
141,214 + GFF835 0.67 +0.2
141,214 + GFF835 0.67 -0.1
141,215 - GFF835 0.67 -0.6
141,215 - GFF835 0.67 +3.0
141,215 - GFF835 0.67 -0.4
141,215 - GFF835 0.67 +0.4
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 +1.0
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 -0.2
141,215 - GFF835 0.67 +0.8
141,215 - GFF835 0.67 -0.1
141,216 + GFF835 0.68 +0.6
141,216 + GFF835 0.68 -0.5
141,216 + GFF835 0.68 +0.4
141,216 + GFF835 0.68 -2.3
141,216 + GFF835 0.68 -0.8
141,216 + GFF835 0.68 -0.3
141,216 + GFF835 0.68 -1.4
141,216 + GFF835 0.68 +0.2
141,216 + GFF835 0.68 +0.4
141,216 + GFF835 0.68 +1.0
141,216 + GFF835 0.68 -0.2
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 -1.4
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 -1.2
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 +0.8
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 -0.1
141,217 - GFF835 0.68 +0.1
141,217 - GFF835 0.68 -0.4
141,217 - GFF835 0.68 -1.3
141,217 - GFF835 0.68 +0.4
141,217 - GFF835 0.68 +0.0
141,217 - GFF835 0.68 -1.4
141,217 - GFF835 0.68 -1.2
141,217 - GFF835 0.68 -2.0
141,217 - GFF835 0.68 -0.2
141,217 - GFF835 0.68 -0.1
141,231 + GFF835 0.69 -1.8
141,231 + GFF835 0.69 -0.6
141,231 + GFF835 0.69 -0.1
141,231 + GFF835 0.69 -0.1
141,231 + GFF835 0.69 -0.8
141,232 - GFF835 0.69 +0.1
141,258 + GFF835 0.71 -0.1
141,258 + GFF835 0.71 -0.1
141,258 + GFF835 0.71 -0.4

Or see this region's nucleotide sequence