Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5 and GFF6 overlap by 37 nucleotides GFF6 and GFF7 overlap by 4 nucleotides GFF7 and GFF8 overlap by 4 nucleotides GFF8 and GFF9 are separated by 19 nucleotides
GFF5 - FIG00537881: hypothetical protein, at 4,278 to 5,351
GFF5
GFF6 - hypothetical protein, at 5,315 to 5,710
GFF6
GFF7 - no description, at 5,707 to 6,081
GFF7
GFF8 - RND efflux system, outer membrane lipoprotein, NodT family, at 6,078 to 7,592
GFF8
GFF9 - CzcABC family efflux RND transporter, transmembrane protein, at 7,612 to 10,707
GFF9
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.511 kb on + strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.640 kb on + strand, within GFF6 at 5.656 kb on + strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.756 kb on + strand, within GFF7 at 5.849 kb on + strand, within GFF7 at 5.850 kb on - strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.308 kb on + strand, within GFF8 at 6.308 kb on + strand, within GFF8 at 6.309 kb on - strand, within GFF8 at 6.434 kb on - strand, within GFF8 at 6.574 kb on + strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.934 kb on + strand, within GFF8 at 6.935 kb on - strand, within GFF8 at 7.139 kb on - strand, within GFF8 at 7.238 kb on - strand, within GFF8 at 7.477 kb on + strand at 7.477 kb on + strand at 7.477 kb on + strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.478 kb on - strand at 7.510 kb on + strand at 7.510 kb on + strand at 7.510 kb on + strand at 7.511 kb on - strand at 7.934 kb on - strand, within GFF9 at 8.092 kb on + strand, within GFF9 at 8.093 kb on - strand, within GFF9 at 8.243 kb on + strand, within GFF9 at 8.244 kb on - strand, within GFF9 at 8.244 kb on - strand, within GFF9 at 8.453 kb on + strand, within GFF9 at 8.454 kb on - strand, within GFF9 at 8.454 kb on - strand, within GFF9 at 8.454 kb on - strand, within GFF9 at 8.471 kb on + strand, within GFF9 at 8.472 kb on - strand, within GFF9 at 8.472 kb on - strand, within GFF9 at 8.589 kb on + strand, within GFF9
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 5,511 + GFF6 0.49 +0.0 5,512 - GFF6 0.50 +0.0 5,512 - GFF6 0.50 +0.0 5,640 + GFF6 0.82 -0.6 5,656 + GFF6 0.86 +0.2 5,657 - GFF6 0.86 -0.2 5,657 - GFF6 0.86 -0.4 5,657 - GFF6 0.86 -0.6 5,657 - GFF6 0.86 -0.9 5,657 - GFF6 0.86 -1.1 5,756 + GFF7 0.13 -0.5 5,849 + GFF7 0.38 -2.0 5,850 - GFF7 0.38 -0.1 5,870 + GFF7 0.43 -0.4 5,870 + GFF7 0.43 -0.3 5,871 - GFF7 0.44 -0.3 5,871 - GFF7 0.44 -2.1 5,871 - GFF7 0.44 +0.9 6,002 + GFF7 0.79 -0.2 6,002 + GFF7 0.79 -0.2 6,002 + GFF7 0.79 -0.1 6,003 - GFF7 0.79 +2.3 6,003 - GFF7 0.79 -0.0 6,003 - GFF7 0.79 -0.1 6,003 - GFF7 0.79 +0.3 6,003 - GFF7 0.79 -0.1 6,308 + GFF8 0.15 -0.5 6,308 + GFF8 0.15 -2.2 6,309 - GFF8 0.15 -0.7 6,434 - GFF8 0.23 +0.3 6,574 + GFF8 0.33 -0.2 6,575 - GFF8 0.33 +0.3 6,575 - GFF8 0.33 -0.7 6,575 - GFF8 0.33 -0.1 6,589 + GFF8 0.34 -1.1 6,589 + GFF8 0.34 -1.1 6,590 - GFF8 0.34 -0.7 6,590 - GFF8 0.34 +0.4 6,590 - GFF8 0.34 -0.5 6,934 + GFF8 0.57 -0.2 6,935 - GFF8 0.57 -0.4 7,139 - GFF8 0.70 -0.3 7,238 - GFF8 0.77 +0.7 7,477 + +0.9 7,477 + -0.3 7,477 + -1.0 7,478 - -0.7 7,478 - -1.1 7,478 - -0.3 7,478 - -0.5 7,478 - -0.5 7,510 + -0.2 7,510 + -0.7 7,510 + -1.1 7,511 - -0.3 7,934 - GFF9 0.10 +0.7 8,092 + GFF9 0.16 -0.8 8,093 - GFF9 0.16 -1.0 8,243 + GFF9 0.20 +0.2 8,244 - GFF9 0.20 -0.7 8,244 - GFF9 0.20 -1.1 8,453 + GFF9 0.27 -0.5 8,454 - GFF9 0.27 -0.3 8,454 - GFF9 0.27 +0.5 8,454 - GFF9 0.27 -1.7 8,471 + GFF9 0.28 -1.3 8,472 - GFF9 0.28 -0.4 8,472 - GFF9 0.28 +0.2 8,589 + GFF9 0.32 -0.7
Or see this region's nucleotide sequence