Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF789 and GFF790 are separated by 179 nucleotides GFF790 and GFF791 are separated by 7 nucleotides GFF791 and GFF792 are separated by 30 nucleotides
GFF789 - protease Do, at 81,683 to 83,071
GFF789
GFF790 - hypothetical protein, at 83,251 to 83,922
GFF790
GFF791 - RNA polymerase sigma factor RpoE, at 83,930 to 84,466
GFF791
GFF792 - putative FecR, at 84,497 to 85,504
GFF792
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.174 kb on - strand at 83.365 kb on + strand, within GFF790 at 83.365 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.632 kb on + strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.978 kb on + strand at 83.979 kb on - strand at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.107 kb on + strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.108 kb on - strand, within GFF791 at 84.137 kb on + strand, within GFF791 at 84.137 kb on + strand, within GFF791 at 84.138 kb on - strand, within GFF791 at 84.465 kb on - strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.496 kb on + strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.497 kb on - strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.502 kb on + strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.503 kb on - strand at 84.846 kb on - strand, within GFF792 at 84.846 kb on - strand, within GFF792 at 85.039 kb on + strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.040 kb on - strand, within GFF792 at 85.220 kb on + strand, within GFF792 at 85.220 kb on + strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.221 kb on - strand, within GFF792 at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 83,136 + +0.4 83,136 + -0.2 83,136 + +0.4 83,136 + -0.4 83,136 + -0.4 83,136 + +0.1 83,136 + -0.3 83,136 + -0.9 83,137 - +1.1 83,137 - -0.4 83,137 - -0.4 83,137 - -1.4 83,137 - +0.7 83,137 - +0.7 83,137 - -0.7 83,137 - -0.3 83,174 - +1.0 83,365 + GFF790 0.17 +1.4 83,365 + GFF790 0.17 -0.0 83,503 + GFF790 0.38 -1.2 83,503 + GFF790 0.38 +0.7 83,503 + GFF790 0.38 -0.4 83,504 - GFF790 0.38 -0.4 83,504 - GFF790 0.38 -0.9 83,632 + GFF790 0.57 -0.6 83,633 - GFF790 0.57 +0.5 83,633 - GFF790 0.57 -0.1 83,726 + GFF790 0.71 +0.1 83,726 + GFF790 0.71 +0.0 83,727 - GFF790 0.71 -0.6 83,727 - GFF790 0.71 +0.9 83,727 - GFF790 0.71 +0.1 83,978 + -1.2 83,979 - -0.2 84,107 + GFF791 0.33 -1.4 84,107 + GFF791 0.33 -1.4 84,107 + GFF791 0.33 -0.2 84,107 + GFF791 0.33 -0.2 84,107 + GFF791 0.33 -0.7 84,108 - GFF791 0.33 +0.4 84,108 - GFF791 0.33 -0.1 84,108 - GFF791 0.33 -0.5 84,137 + GFF791 0.39 -0.9 84,137 + GFF791 0.39 -0.4 84,138 - GFF791 0.39 -0.3 84,465 - +0.4 84,496 + +0.0 84,496 + +0.4 84,496 + -0.7 84,496 + -0.1 84,497 - -0.6 84,497 - -0.5 84,497 - +2.0 84,497 - -0.3 84,497 - -0.2 84,497 - -0.2 84,502 + -0.3 84,502 + -0.1 84,502 + +0.7 84,502 + +0.3 84,503 - -0.1 84,503 - -0.8 84,503 - -0.2 84,503 - +2.7 84,846 - GFF792 0.35 -0.0 84,846 - GFF792 0.35 -0.4 85,039 + GFF792 0.54 -1.7 85,040 - GFF792 0.54 +0.1 85,040 - GFF792 0.54 -1.5 85,040 - GFF792 0.54 -1.6 85,040 - GFF792 0.54 +0.0 85,220 + GFF792 0.72 -1.1 85,220 + GFF792 0.72 -1.9 85,221 - GFF792 0.72 -0.4 85,221 - GFF792 0.72 +0.5 85,221 - GFF792 0.72 -0.1 85,454 + +0.1 85,454 + -0.2 85,454 + -1.2 85,454 + -0.9 85,454 + -0.1 85,455 - -0.9 85,455 - -0.6 85,455 - -0.9
Or see this region's nucleotide sequence