Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF779 and GFF780 are separated by 175 nucleotides GFF780 and GFF781 overlap by 8 nucleotides
GFF779 - hypothetical protein, at 60,892 to 62,088
GFF779
GFF780 - no description, at 62,264 to 62,692
GFF780
GFF781 - hypothetical protein, at 62,685 to 64,532
GFF781
Position (kb) 62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.342 kb on + strand, within GFF779 at 61.342 kb on + strand, within GFF779 at 61.342 kb on + strand, within GFF779 at 61.343 kb on - strand, within GFF779 at 61.343 kb on - strand, within GFF779 at 61.428 kb on + strand, within GFF779 at 61.429 kb on - strand, within GFF779 at 61.429 kb on - strand, within GFF779 at 61.459 kb on + strand, within GFF779 at 61.510 kb on + strand, within GFF779 at 61.510 kb on + strand, within GFF779 at 61.511 kb on - strand, within GFF779 at 61.530 kb on + strand, within GFF779 at 61.530 kb on + strand, within GFF779 at 61.531 kb on - strand, within GFF779 at 61.544 kb on - strand, within GFF779 at 61.550 kb on + strand, within GFF779 at 61.551 kb on - strand, within GFF779 at 61.551 kb on - strand, within GFF779 at 61.645 kb on + strand, within GFF779 at 61.744 kb on + strand, within GFF779 at 61.744 kb on + strand, within GFF779 at 61.763 kb on - strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.997 kb on - strand at 61.997 kb on - strand at 62.035 kb on + strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.139 kb on + strand at 62.139 kb on + strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.257 kb on - strand at 62.276 kb on + strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.502 kb on - strand, within GFF780 at 62.502 kb on - strand, within GFF780 at 62.546 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.642 kb on - strand, within GFF780 at 62.690 kb on + strand at 62.690 kb on + strand at 62.691 kb on - strand at 62.691 kb on - strand at 62.755 kb on + strand at 63.410 kb on - strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.634 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,342 + GFF779 0.38 +0.1 61,342 + GFF779 0.38 +2.7 61,342 + GFF779 0.38 -1.6 61,343 - GFF779 0.38 -0.1 61,343 - GFF779 0.38 +0.2 61,428 + GFF779 0.45 -0.3 61,429 - GFF779 0.45 +0.6 61,429 - GFF779 0.45 -0.3 61,459 + GFF779 0.47 -1.4 61,510 + GFF779 0.52 +0.4 61,510 + GFF779 0.52 -2.3 61,511 - GFF779 0.52 -0.1 61,530 + GFF779 0.53 -0.2 61,530 + GFF779 0.53 +0.4 61,531 - GFF779 0.53 -0.9 61,544 - GFF779 0.54 -0.6 61,550 + GFF779 0.55 -1.6 61,551 - GFF779 0.55 -0.2 61,551 - GFF779 0.55 -0.6 61,645 + GFF779 0.63 -0.8 61,744 + GFF779 0.71 +0.8 61,744 + GFF779 0.71 +0.1 61,763 - GFF779 0.73 -1.1 61,869 + GFF779 0.82 -1.2 61,869 + GFF779 0.82 -0.8 61,997 - -0.6 61,997 - -1.2 62,035 + +0.5 62,036 - -0.5 62,036 - +0.0 62,036 - +0.1 62,139 + -0.9 62,139 + -0.5 62,140 - -1.1 62,140 - -0.2 62,140 - +1.0 62,242 + -0.0 62,242 + +0.0 62,242 + +0.2 62,243 - +0.7 62,243 - -0.8 62,243 - -0.3 62,243 - -0.3 62,257 - -0.8 62,276 + -0.6 62,277 - -0.1 62,277 - -0.8 62,277 - -0.9 62,502 - GFF780 0.55 -0.9 62,502 - GFF780 0.55 -0.2 62,546 + GFF780 0.66 -0.9 62,615 + GFF780 0.82 -0.7 62,615 + GFF780 0.82 -1.3 62,615 + GFF780 0.82 -0.1 62,615 + GFF780 0.82 +0.7 62,615 + GFF780 0.82 +0.8 62,616 - GFF780 0.82 -0.7 62,616 - GFF780 0.82 +0.0 62,616 - GFF780 0.82 -0.5 62,616 - GFF780 0.82 -0.1 62,642 - GFF780 0.88 -0.7 62,690 + -0.2 62,690 + +0.8 62,691 - -1.4 62,691 - -0.3 62,755 + +0.2 63,410 - GFF781 0.39 +0.7 63,559 + GFF781 0.47 +0.6 63,559 + GFF781 0.47 +1.1 63,634 + GFF781 0.51 +0.6 63,640 + GFF781 0.52 -0.1 63,640 + GFF781 0.52 -2.3 63,640 + GFF781 0.52 -0.7 63,641 - GFF781 0.52 -0.2 63,641 - GFF781 0.52 +0.7 63,641 - GFF781 0.52 -0.9
Or see this region's nucleotide sequence