Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF770 and GFF771 overlap by 4 nucleotides GFF771 and GFF772 overlap by 11 nucleotides
GFF770 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 38,687 to 40,849
GFF770
GFF771 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 40,846 to 42,714
GFF771
GFF772 - 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) / Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 42,704 to 47,881
GFF772
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.926 kb on + strand, within GFF770 at 40.325 kb on + strand, within GFF770 at 40.326 kb on - strand, within GFF770 at 40.571 kb on + strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.669 kb on + strand at 41.204 kb on - strand, within GFF771 at 41.204 kb on - strand, within GFF771 at 41.345 kb on - strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.485 kb on + strand, within GFF771 at 41.486 kb on - strand, within GFF771 at 41.486 kb on - strand, within GFF771 at 41.497 kb on + strand, within GFF771 at 41.498 kb on - strand, within GFF771 at 41.591 kb on - strand, within GFF771 at 41.608 kb on + strand, within GFF771 at 41.609 kb on - strand, within GFF771 at 41.885 kb on - strand, within GFF771 at 41.887 kb on + strand, within GFF771 at 41.950 kb on + strand, within GFF771 at 42.200 kb on - strand, within GFF771 at 42.469 kb on + strand, within GFF771 at 42.470 kb on - strand, within GFF771 at 43.218 kb on - strand at 43.424 kb on + strand, within GFF772 at 43.460 kb on + strand, within GFF772 at 43.461 kb on - strand, within GFF772 at 43.577 kb on + strand, within GFF772 at 43.578 kb on - strand, within GFF772
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,926 + GFF770 0.57 -0.4 40,325 + GFF770 0.76 +0.2 40,326 - GFF770 0.76 +0.2 40,571 + GFF770 0.87 +0.5 40,572 - GFF770 0.87 -1.0 40,572 - GFF770 0.87 +0.1 40,572 - GFF770 0.87 -0.2 40,572 - GFF770 0.87 -0.1 40,572 - GFF770 0.87 -3.2 40,572 - GFF770 0.87 +1.3 40,572 - GFF770 0.87 -1.3 40,669 + +0.3 41,204 - GFF771 0.19 -0.3 41,204 - GFF771 0.19 -0.3 41,345 - GFF771 0.27 -0.3 41,458 + GFF771 0.33 -0.0 41,458 + GFF771 0.33 -0.3 41,458 + GFF771 0.33 -1.0 41,459 - GFF771 0.33 -1.2 41,459 - GFF771 0.33 -0.1 41,459 - GFF771 0.33 -0.1 41,459 - GFF771 0.33 -0.6 41,485 + GFF771 0.34 +0.1 41,486 - GFF771 0.34 -0.2 41,486 - GFF771 0.34 -0.3 41,497 + GFF771 0.35 -0.5 41,498 - GFF771 0.35 -0.1 41,591 - GFF771 0.40 +0.2 41,608 + GFF771 0.41 -0.8 41,609 - GFF771 0.41 -0.4 41,885 - GFF771 0.56 -0.8 41,887 + GFF771 0.56 -0.0 41,950 + GFF771 0.59 -0.2 42,200 - GFF771 0.72 -0.7 42,469 + GFF771 0.87 -0.2 42,470 - GFF771 0.87 -0.2 43,218 - -0.1 43,424 + GFF772 0.14 -0.2 43,460 + GFF772 0.15 -0.3 43,461 - GFF772 0.15 -0.2 43,577 + GFF772 0.17 -0.5 43,578 - GFF772 0.17 -0.0
Or see this region's nucleotide sequence