Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF749 and GFF750 are separated by 168 nucleotides GFF750 and GFF751 are separated by 6 nucleotides GFF751 and GFF752 are separated by 36 nucleotides GFF752 and GFF753 are separated by 130 nucleotides
GFF749 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 12,450 to 13,478
GFF749
GFF750 - Transcriptional regulator LigR, LysR family, at 13,647 to 14,924
GFF750
GFF751 - probable acetyltransferase protein, at 14,931 to 15,380
GFF751
GFF752 - hypothetical protein, at 15,417 to 15,758
GFF752
GFF753 - Methyl-accepting chemotaxis sensor/transducer protein, at 15,889 to 17,532
GFF753
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 12.694 kb on + strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.790 kb on + strand, within GFF749 at 13.453 kb on + strand at 13.454 kb on - strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.561 kb on - strand at 14.208 kb on + strand, within GFF750 at 14.209 kb on - strand, within GFF750 at 14.209 kb on - strand, within GFF750 at 14.394 kb on + strand, within GFF750 at 14.395 kb on - strand, within GFF750 at 14.395 kb on - strand, within GFF750 at 14.996 kb on - strand, within GFF751 at 14.996 kb on - strand, within GFF751 at 14.996 kb on - strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.047 kb on - strand, within GFF751 at 15.152 kb on - strand, within GFF751 at 15.236 kb on - strand, within GFF751 at 15.248 kb on + strand, within GFF751 at 15.248 kb on + strand, within GFF751 at 15.249 kb on - strand, within GFF751 at 15.328 kb on + strand, within GFF751 at 15.329 kb on - strand, within GFF751 at 15.329 kb on - strand, within GFF751 at 15.372 kb on + strand at 15.372 kb on + strand at 15.372 kb on + strand at 15.372 kb on + strand at 15.373 kb on - strand at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.623 kb on - strand, within GFF752 at 15.677 kb on - strand, within GFF752
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,694 + GFF749 0.24 -0.8 12,695 - GFF749 0.24 -0.7 12,695 - GFF749 0.24 -0.5 12,695 - GFF749 0.24 -0.1 12,790 + GFF749 0.33 -0.4 13,453 + +1.2 13,454 - +0.7 13,560 + -0.4 13,560 + -0.4 13,560 + -0.5 13,560 + +0.1 13,561 - -0.2 14,208 + GFF750 0.44 -0.0 14,209 - GFF750 0.44 +0.9 14,209 - GFF750 0.44 +2.6 14,394 + GFF750 0.58 -0.1 14,395 - GFF750 0.59 +0.7 14,395 - GFF750 0.59 +0.4 14,996 - GFF751 0.14 -0.5 14,996 - GFF751 0.14 +0.2 14,996 - GFF751 0.14 -0.8 15,046 + GFF751 0.26 +0.0 15,046 + GFF751 0.26 -0.6 15,046 + GFF751 0.26 -0.2 15,047 - GFF751 0.26 -0.8 15,152 - GFF751 0.49 +0.0 15,236 - GFF751 0.68 -0.5 15,248 + GFF751 0.70 +0.4 15,248 + GFF751 0.70 -0.2 15,249 - GFF751 0.71 +1.2 15,328 + GFF751 0.88 +0.4 15,329 - GFF751 0.88 +0.2 15,329 - GFF751 0.88 +0.2 15,372 + +0.4 15,372 + -0.4 15,372 + -0.4 15,372 + +0.6 15,373 - -0.8 15,536 + GFF752 0.35 -0.4 15,536 + GFF752 0.35 +0.2 15,536 + GFF752 0.35 +0.2 15,536 + GFF752 0.35 +1.7 15,536 + GFF752 0.35 -0.0 15,537 - GFF752 0.35 -1.2 15,537 - GFF752 0.35 -0.7 15,537 - GFF752 0.35 -0.5 15,537 - GFF752 0.35 -0.7 15,537 - GFF752 0.35 -0.4 15,623 - GFF752 0.60 +0.9 15,677 - GFF752 0.76 +0.4
Or see this region's nucleotide sequence