Strain Fitness in Variovorax sp. SCN45 around GFF7410

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7410 and GFF7411 overlap by 4 nucleotidesGFF7411 and GFF7412 overlap by 4 nucleotides GFF7410 - no description, at 338 to 574 GFF7410 GFF7411 - no description, at 571 to 1,416 GFF7411 GFF7412 - no description, at 1,413 to 1,997 GFF7412 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.057 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.073 kb on + strandat 0.104 kb on - strandat 0.120 kb on + strandat 0.138 kb on + strandat 0.138 kb on + strandat 0.138 kb on + strandat 0.138 kb on + strandat 0.139 kb on - strandat 0.139 kb on - strandat 0.139 kb on - strandat 0.154 kb on + strandat 0.162 kb on + strandat 0.162 kb on + strandat 0.163 kb on - strandat 0.163 kb on - strandat 0.188 kb on + strandat 0.188 kb on + strandat 0.189 kb on - strandat 0.189 kb on - strandat 0.303 kb on + strandat 0.304 kb on - strandat 0.304 kb on - strandat 0.326 kb on + strandat 0.326 kb on + strandat 0.326 kb on + strandat 0.326 kb on + strandat 0.326 kb on + strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.327 kb on - strandat 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.368 kb on + strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.369 kb on - strand, within GFF7410at 0.446 kb on + strand, within GFF7410at 0.446 kb on + strand, within GFF7410at 0.581 kb on + strandat 0.581 kb on + strandat 0.581 kb on + strandat 0.582 kb on - strandat 0.582 kb on - strandat 0.582 kb on - strandat 0.601 kb on + strandat 0.601 kb on + strandat 0.601 kb on + strandat 0.602 kb on - strandat 0.602 kb on - strandat 0.655 kb on + strandat 0.655 kb on + strandat 0.655 kb on + strandat 0.655 kb on + strandat 0.655 kb on + strandat 0.656 kb on - strand, within GFF7411at 0.656 kb on - strand, within GFF7411at 0.656 kb on - strand, within GFF7411at 0.675 kb on + strand, within GFF7411at 0.675 kb on + strand, within GFF7411at 0.675 kb on + strand, within GFF7411at 0.675 kb on + strand, within GFF7411at 0.676 kb on - strand, within GFF7411at 0.886 kb on + strand, within GFF7411at 0.927 kb on + strand, within GFF7411at 0.927 kb on + strand, within GFF7411at 0.927 kb on + strand, within GFF7411at 0.927 kb on + strand, within GFF7411at 0.927 kb on + strand, within GFF7411at 0.928 kb on - strand, within GFF7411at 0.982 kb on + strand, within GFF7411at 0.982 kb on + strand, within GFF7411at 1.097 kb on + strand, within GFF7411at 1.108 kb on + strand, within GFF7411at 1.109 kb on - strand, within GFF7411at 1.109 kb on - strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.174 kb on + strand, within GFF7411at 1.175 kb on - strand, within GFF7411at 1.175 kb on - strand, within GFF7411at 1.175 kb on - strand, within GFF7411at 1.175 kb on - strand, within GFF7411at 1.175 kb on - strand, within GFF7411at 1.184 kb on - strand, within GFF7411at 1.184 kb on - strand, within GFF7411at 1.473 kb on + strand, within GFF7412at 1.474 kb on - strand, within GFF7412at 1.474 kb on - strand, within GFF7412at 1.474 kb on - strand, within GFF7412at 1.474 kb on - strand, within GFF7412at 1.474 kb on - strand, within GFF7412at 1.482 kb on + strand, within GFF7412at 1.482 kb on + strand, within GFF7412

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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57 + -0.5
73 + -0.1
73 + +0.1
73 + +0.4
73 + +0.1
73 + -0.9
73 + -0.6
73 + -0.1
73 + -0.1
73 + -0.6
104 - -0.6
120 + -0.4
138 + -0.1
138 + -1.0
138 + -0.2
138 + -1.0
139 - -0.1
139 - +0.0
139 - -0.5
154 + -0.7
162 + -1.9
162 + +0.0
163 - -0.3
163 - -1.7
188 + +0.9
188 + -1.6
189 - -0.1
189 - -1.2
303 + +0.7
304 - -0.4
304 - -0.2
326 + -0.8
326 + -0.1
326 + -3.1
326 + -0.2
326 + -0.2
327 - +0.1
327 - +0.1
327 - -0.5
327 - -0.1
327 - -0.8
327 - -1.2
327 - -0.6
327 - -0.2
327 - +0.1
327 - -0.1
368 + GFF7410 0.13 +0.0
368 + GFF7410 0.13 -1.1
368 + GFF7410 0.13 +0.3
368 + GFF7410 0.13 +0.3
368 + GFF7410 0.13 -1.7
368 + GFF7410 0.13 +0.3
368 + GFF7410 0.13 -0.3
368 + GFF7410 0.13 -0.4
368 + GFF7410 0.13 -0.0
368 + GFF7410 0.13 -0.1
369 - GFF7410 0.13 -0.8
369 - GFF7410 0.13 +0.6
369 - GFF7410 0.13 -0.1
369 - GFF7410 0.13 -0.2
369 - GFF7410 0.13 +0.4
369 - GFF7410 0.13 +0.1
369 - GFF7410 0.13 +0.7
369 - GFF7410 0.13 +0.3
369 - GFF7410 0.13 -0.4
369 - GFF7410 0.13 -0.6
369 - GFF7410 0.13 +0.7
446 + GFF7410 0.46 +0.6
446 + GFF7410 0.46 -0.3
581 + -1.5
581 + +0.2
581 + +0.3
582 - -0.1
582 - -0.6
582 - +0.4
601 + -0.7
601 + +0.2
601 + -0.2
602 - -0.6
602 - -0.6
655 + -0.4
655 + -0.1
655 + -0.3
655 + +0.4
655 + -1.7
656 - GFF7411 0.10 -0.6
656 - GFF7411 0.10 +0.8
656 - GFF7411 0.10 -0.3
675 + GFF7411 0.12 -0.3
675 + GFF7411 0.12 +0.9
675 + GFF7411 0.12 -0.4
675 + GFF7411 0.12 +0.1
676 - GFF7411 0.12 +0.4
886 + GFF7411 0.37 +0.5
927 + GFF7411 0.42 -0.7
927 + GFF7411 0.42 -0.5
927 + GFF7411 0.42 -0.3
927 + GFF7411 0.42 -0.1
927 + GFF7411 0.42 +0.1
928 - GFF7411 0.42 +0.6
982 + GFF7411 0.49 -0.4
982 + GFF7411 0.49 +0.3
1,097 + GFF7411 0.62 -0.1
1,108 + GFF7411 0.63 -0.8
1,109 - GFF7411 0.64 +1.5
1,109 - GFF7411 0.64 +0.5
1,174 + GFF7411 0.71 +0.2
1,174 + GFF7411 0.71 -1.3
1,174 + GFF7411 0.71 +0.8
1,174 + GFF7411 0.71 -0.2
1,174 + GFF7411 0.71 +0.3
1,174 + GFF7411 0.71 -0.1
1,174 + GFF7411 0.71 -0.9
1,174 + GFF7411 0.71 +1.5
1,174 + GFF7411 0.71 -2.3
1,174 + GFF7411 0.71 -0.3
1,175 - GFF7411 0.71 +0.7
1,175 - GFF7411 0.71 +0.4
1,175 - GFF7411 0.71 -0.5
1,175 - GFF7411 0.71 -1.1
1,175 - GFF7411 0.71 -0.5
1,184 - GFF7411 0.72 -0.2
1,184 - GFF7411 0.72 -1.5
1,473 + GFF7412 0.10 -1.3
1,474 - GFF7412 0.10 -0.4
1,474 - GFF7412 0.10 +0.0
1,474 - GFF7412 0.10 -1.1
1,474 - GFF7412 0.10 +0.3
1,474 - GFF7412 0.10 +0.3
1,482 + GFF7412 0.12 +0.0
1,482 + GFF7412 0.12 -0.2

Or see this region's nucleotide sequence