Strain Fitness in Variovorax sp. SCN45 around GFF7388

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7386 and GFF7387 are separated by 33 nucleotidesGFF7387 and GFF7388 are separated by 6 nucleotidesGFF7388 and GFF7389 are separated by 107 nucleotides GFF7386 - no description, at 4,457 to 5,329 GFF7386 GFF7387 - no description, at 5,363 to 5,500 GFF7387 GFF7388 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,507 to 6,259 GFF7388 GFF7389 - Cyclohexanone monooxygenase (EC 1.14.13.22), at 6,367 to 7,797 GFF7389 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.667 kb on + strand, within GFF7386at 4.667 kb on + strand, within GFF7386at 4.667 kb on + strand, within GFF7386at 4.717 kb on - strand, within GFF7386at 4.889 kb on + strand, within GFF7386at 4.944 kb on - strand, within GFF7386at 4.944 kb on - strand, within GFF7386at 5.156 kb on + strand, within GFF7386at 5.156 kb on + strand, within GFF7386at 5.157 kb on - strand, within GFF7386at 5.476 kb on + strand, within GFF7387at 5.498 kb on + strandat 5.498 kb on + strandat 5.499 kb on - strandat 5.712 kb on + strand, within GFF7388at 5.712 kb on + strand, within GFF7388at 5.822 kb on + strand, within GFF7388at 5.888 kb on - strand, within GFF7388at 5.960 kb on + strand, within GFF7388at 6.061 kb on - strand, within GFF7388at 6.562 kb on + strand, within GFF7389at 6.562 kb on + strand, within GFF7389at 6.563 kb on - strand, within GFF7389at 6.569 kb on - strand, within GFF7389at 6.587 kb on - strand, within GFF7389at 6.631 kb on + strand, within GFF7389at 6.632 kb on - strand, within GFF7389at 6.632 kb on - strand, within GFF7389at 6.633 kb on + strand, within GFF7389at 6.634 kb on - strand, within GFF7389at 6.634 kb on - strand, within GFF7389at 6.634 kb on - strand, within GFF7389at 6.655 kb on + strand, within GFF7389at 6.656 kb on - strand, within GFF7389at 6.656 kb on - strand, within GFF7389at 6.656 kb on - strand, within GFF7389at 6.789 kb on + strand, within GFF7389at 6.994 kb on + strand, within GFF7389at 6.995 kb on - strand, within GFF7389at 7.133 kb on - strand, within GFF7389

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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4,667 + GFF7386 0.24 -0.1
4,667 + GFF7386 0.24 -0.4
4,667 + GFF7386 0.24 +0.1
4,717 - GFF7386 0.30 -0.1
4,889 + GFF7386 0.49 -1.1
4,944 - GFF7386 0.56 -2.1
4,944 - GFF7386 0.56 -0.7
5,156 + GFF7386 0.80 -0.4
5,156 + GFF7386 0.80 +0.7
5,157 - GFF7386 0.80 -0.1
5,476 + GFF7387 0.82 +0.3
5,498 + +0.5
5,498 + -0.8
5,499 - -0.2
5,712 + GFF7388 0.27 +0.9
5,712 + GFF7388 0.27 +1.3
5,822 + GFF7388 0.42 -1.2
5,888 - GFF7388 0.51 +0.5
5,960 + GFF7388 0.60 -0.2
6,061 - GFF7388 0.74 +0.5
6,562 + GFF7389 0.14 -0.2
6,562 + GFF7389 0.14 +1.1
6,563 - GFF7389 0.14 +0.3
6,569 - GFF7389 0.14 -0.8
6,587 - GFF7389 0.15 +0.2
6,631 + GFF7389 0.18 +0.7
6,632 - GFF7389 0.19 -0.7
6,632 - GFF7389 0.19 +0.6
6,633 + GFF7389 0.19 -0.0
6,634 - GFF7389 0.19 -0.2
6,634 - GFF7389 0.19 -1.0
6,634 - GFF7389 0.19 -0.5
6,655 + GFF7389 0.20 +0.0
6,656 - GFF7389 0.20 +1.7
6,656 - GFF7389 0.20 -1.1
6,656 - GFF7389 0.20 -0.5
6,789 + GFF7389 0.29 -0.8
6,994 + GFF7389 0.44 -0.1
6,995 - GFF7389 0.44 -0.7
7,133 - GFF7389 0.54 -1.0

Or see this region's nucleotide sequence