Strain Fitness in Variovorax sp. SCN45 around GFF7377

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7376 and GFF7377 are separated by 152 nucleotidesGFF7377 and GFF7378 overlap by 4 nucleotidesGFF7378 and GFF7379 overlap by 4 nucleotides GFF7376 - Transcriptional regulator, LysR family, at 5,973 to 6,884 GFF7376 GFF7377 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 7,037 to 8,560 GFF7377 GFF7378 - protein of unknown function DUF1311, at 8,557 to 8,955 GFF7378 GFF7379 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12), at 8,952 to 10,106 GFF7379 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.391 kb on + strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.862 kb on + strandat 6.862 kb on + strandat 6.862 kb on + strandat 6.863 kb on - strandat 6.939 kb on - strandat 6.971 kb on + strandat 6.971 kb on + strandat 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.575 kb on - strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.604 kb on - strand, within GFF7377at 7.604 kb on - strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.767 kb on - strand, within GFF7377at 7.767 kb on - strand, within GFF7377at 7.804 kb on + strand, within GFF7377at 8.198 kb on + strand, within GFF7377at 8.198 kb on + strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.199 kb on - strand, within GFF7377at 8.474 kb on + strandat 8.475 kb on - strandat 8.475 kb on - strandat 8.475 kb on - strandat 8.554 kb on + strandat 8.554 kb on + strandat 8.554 kb on + strandat 8.554 kb on + strandat 8.554 kb on + strandat 8.554 kb on + strandat 8.555 kb on - strandat 8.555 kb on - strandat 8.555 kb on - strandat 8.638 kb on + strand, within GFF7378at 8.740 kb on + strand, within GFF7378at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.111 kb on + strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.112 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.316 kb on - strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.390 kb on + strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.391 kb on - strand, within GFF7379at 9.528 kb on + strand, within GFF7379at 9.529 kb on - strand, within GFF7379at 9.529 kb on - strand, within GFF7379at 9.529 kb on - strand, within GFF7379

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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6,277 + GFF7376 0.33 -0.9
6,277 + GFF7376 0.33 +0.0
6,277 + GFF7376 0.33 -0.4
6,313 + GFF7376 0.37 +0.3
6,313 + GFF7376 0.37 -0.3
6,313 + GFF7376 0.37 -0.3
6,313 + GFF7376 0.37 -0.8
6,313 + GFF7376 0.37 +0.4
6,313 + GFF7376 0.37 -0.6
6,313 + GFF7376 0.37 +0.9
6,313 + GFF7376 0.37 -0.1
6,314 - GFF7376 0.37 +1.4
6,314 - GFF7376 0.37 -0.5
6,314 - GFF7376 0.37 +0.4
6,314 - GFF7376 0.37 -0.8
6,314 - GFF7376 0.37 -0.4
6,314 - GFF7376 0.37 +1.1
6,314 - GFF7376 0.37 -0.2
6,376 + GFF7376 0.44 -0.6
6,376 + GFF7376 0.44 +0.1
6,376 + GFF7376 0.44 +0.2
6,376 + GFF7376 0.44 -0.0
6,376 + GFF7376 0.44 -0.4
6,376 + GFF7376 0.44 +1.0
6,376 + GFF7376 0.44 -1.6
6,376 + GFF7376 0.44 +0.8
6,376 + GFF7376 0.44 +0.0
6,376 + GFF7376 0.44 -0.9
6,377 - GFF7376 0.44 -0.7
6,377 - GFF7376 0.44 -0.0
6,377 - GFF7376 0.44 +0.1
6,377 - GFF7376 0.44 +0.1
6,377 - GFF7376 0.44 -1.1
6,377 - GFF7376 0.44 -0.2
6,377 - GFF7376 0.44 -0.6
6,391 + GFF7376 0.46 -1.8
6,392 - GFF7376 0.46 -0.6
6,392 - GFF7376 0.46 -0.2
6,392 - GFF7376 0.46 +0.1
6,406 + GFF7376 0.47 -0.5
6,406 + GFF7376 0.47 +0.4
6,407 - GFF7376 0.48 -0.3
6,407 - GFF7376 0.48 -1.7
6,862 + -0.3
6,862 + -0.0
6,862 + -0.0
6,863 - +0.1
6,939 - +0.2
6,971 + -0.4
6,971 + -0.8
7,466 + GFF7377 0.28 -0.3
7,466 + GFF7377 0.28 +0.4
7,466 + GFF7377 0.28 -0.5
7,466 + GFF7377 0.28 +1.1
7,466 + GFF7377 0.28 +0.0
7,466 + GFF7377 0.28 -1.6
7,467 - GFF7377 0.28 -0.9
7,467 - GFF7377 0.28 -0.2
7,467 - GFF7377 0.28 -0.6
7,467 - GFF7377 0.28 +0.3
7,467 - GFF7377 0.28 +0.1
7,575 - GFF7377 0.35 -0.8
7,603 + GFF7377 0.37 -0.1
7,603 + GFF7377 0.37 +2.0
7,603 + GFF7377 0.37 -1.0
7,603 + GFF7377 0.37 -0.6
7,603 + GFF7377 0.37 +0.3
7,603 + GFF7377 0.37 +1.4
7,604 - GFF7377 0.37 -0.6
7,604 - GFF7377 0.37 -0.8
7,766 + GFF7377 0.48 +0.2
7,766 + GFF7377 0.48 +0.4
7,766 + GFF7377 0.48 -0.6
7,766 + GFF7377 0.48 +0.7
7,766 + GFF7377 0.48 -0.3
7,766 + GFF7377 0.48 -0.1
7,767 - GFF7377 0.48 +0.2
7,767 - GFF7377 0.48 +0.4
7,804 + GFF7377 0.50 -0.0
8,198 + GFF7377 0.76 +1.3
8,198 + GFF7377 0.76 +0.9
8,199 - GFF7377 0.76 +0.2
8,199 - GFF7377 0.76 -0.6
8,199 - GFF7377 0.76 -0.1
8,199 - GFF7377 0.76 +0.9
8,199 - GFF7377 0.76 -1.8
8,199 - GFF7377 0.76 -0.4
8,474 + -0.3
8,475 - -0.5
8,475 - +1.2
8,475 - -0.9
8,554 + -0.5
8,554 + +0.0
8,554 + -0.3
8,554 + -0.1
8,554 + +1.3
8,554 + -0.8
8,555 - -1.5
8,555 - -0.2
8,555 - -1.3
8,638 + GFF7378 0.20 -1.6
8,740 + GFF7378 0.46 -0.1
9,111 + GFF7379 0.14 -1.0
9,111 + GFF7379 0.14 -1.0
9,111 + GFF7379 0.14 +0.1
9,111 + GFF7379 0.14 -0.2
9,111 + GFF7379 0.14 -0.4
9,111 + GFF7379 0.14 +0.3
9,111 + GFF7379 0.14 -0.5
9,111 + GFF7379 0.14 -0.5
9,111 + GFF7379 0.14 +2.0
9,112 - GFF7379 0.14 +0.3
9,112 - GFF7379 0.14 -0.1
9,112 - GFF7379 0.14 -0.7
9,112 - GFF7379 0.14 -0.0
9,112 - GFF7379 0.14 -0.1
9,112 - GFF7379 0.14 -0.5
9,112 - GFF7379 0.14 -0.7
9,112 - GFF7379 0.14 -1.7
9,112 - GFF7379 0.14 -0.1
9,112 - GFF7379 0.14 +1.4
9,112 - GFF7379 0.14 -0.1
9,316 - GFF7379 0.32 -1.5
9,316 - GFF7379 0.32 +0.1
9,316 - GFF7379 0.32 -0.6
9,316 - GFF7379 0.32 +0.2
9,316 - GFF7379 0.32 +0.7
9,316 - GFF7379 0.32 +0.2
9,316 - GFF7379 0.32 -0.4
9,316 - GFF7379 0.32 +1.0
9,390 + GFF7379 0.38 -0.1
9,390 + GFF7379 0.38 -0.4
9,390 + GFF7379 0.38 -0.1
9,390 + GFF7379 0.38 -0.4
9,390 + GFF7379 0.38 -0.7
9,390 + GFF7379 0.38 +0.3
9,390 + GFF7379 0.38 -0.4
9,391 - GFF7379 0.38 +0.8
9,391 - GFF7379 0.38 -0.1
9,391 - GFF7379 0.38 +0.4
9,391 - GFF7379 0.38 -0.6
9,391 - GFF7379 0.38 -0.4
9,391 - GFF7379 0.38 +0.2
9,391 - GFF7379 0.38 -0.4
9,391 - GFF7379 0.38 -0.1
9,528 + GFF7379 0.50 -0.1
9,529 - GFF7379 0.50 -1.9
9,529 - GFF7379 0.50 -1.2
9,529 - GFF7379 0.50 +0.2

Or see this region's nucleotide sequence