Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7258 and GFF7259 are separated by 183 nucleotides GFF7259 and GFF7260 are separated by 30 nucleotides GFF7260 and GFF7261 are separated by 2 nucleotides
GFF7258 - Transcriptional regulator, IclR family, at 4,954 to 6,501
GFF7258
GFF7259 - no description, at 6,685 to 7,509
GFF7259
GFF7260 - hypothetical protein, at 7,540 to 7,989
GFF7260
GFF7261 - 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26), at 7,992 to 9,428
GFF7261
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1 at 6.052 kb on + strand, within GFF7258 at 6.219 kb on - strand, within GFF7258 at 6.293 kb on + strand, within GFF7258 at 6.335 kb on + strand, within GFF7258 at 6.336 kb on - strand, within GFF7258 at 6.398 kb on + strand at 6.408 kb on + strand at 6.568 kb on - strand at 6.568 kb on - strand at 6.591 kb on + strand at 6.592 kb on - strand at 6.823 kb on + strand, within GFF7259 at 6.823 kb on + strand, within GFF7259 at 6.824 kb on - strand, within GFF7259 at 7.125 kb on + strand, within GFF7259 at 7.207 kb on + strand, within GFF7259 at 7.207 kb on + strand, within GFF7259 at 7.208 kb on - strand, within GFF7259 at 7.208 kb on - strand, within GFF7259 at 7.261 kb on + strand, within GFF7259 at 7.551 kb on + strand at 7.552 kb on - strand at 7.555 kb on + strand at 7.859 kb on - strand, within GFF7260 at 7.900 kb on + strand, within GFF7260 at 7.901 kb on - strand, within GFF7260 at 7.901 kb on - strand, within GFF7260 at 7.901 kb on - strand, within GFF7260 at 8.333 kb on + strand, within GFF7261
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 6,052 + GFF7258 0.71 +0.5 6,219 - GFF7258 0.82 -0.5 6,293 + GFF7258 0.86 -0.4 6,335 + GFF7258 0.89 -0.9 6,336 - GFF7258 0.89 +1.3 6,398 + +0.4 6,408 + -1.3 6,568 - -1.2 6,568 - +0.1 6,591 + -1.3 6,592 - -1.0 6,823 + GFF7259 0.17 +0.6 6,823 + GFF7259 0.17 -0.4 6,824 - GFF7259 0.17 +0.1 7,125 + GFF7259 0.53 +0.0 7,207 + GFF7259 0.63 +0.3 7,207 + GFF7259 0.63 -0.1 7,208 - GFF7259 0.63 +0.5 7,208 - GFF7259 0.63 -0.5 7,261 + GFF7259 0.70 +0.1 7,551 + +0.5 7,552 - -0.4 7,555 + -0.5 7,859 - GFF7260 0.71 +0.5 7,900 + GFF7260 0.80 -0.3 7,901 - GFF7260 0.80 -0.0 7,901 - GFF7260 0.80 -0.3 7,901 - GFF7260 0.80 +1.0 8,333 + GFF7261 0.24 +0.5
Or see this region's nucleotide sequence