Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7195 and GFF7196 overlap by 4 nucleotides GFF7196 and GFF7197 are separated by 10 nucleotides GFF7197 and GFF7198 are separated by 97 nucleotides
GFF7195 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 13,161 to 14,174
GFF7195
GFF7196 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 14,171 to 15,022
GFF7196
GFF7197 - KEGG: peptide/nickel transport system ATP-binding protein, at 15,033 to 15,869
GFF7197
GFF7198 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 15,967 to 17,484
GFF7198
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2 at 13.532 kb on - strand, within GFF7195 at 13.923 kb on + strand, within GFF7195 at 14.573 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.667 kb on - strand, within GFF7196 at 14.867 kb on + strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.891 kb on + strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 15.804 kb on + strand at 15.805 kb on - strand at 15.883 kb on + strand at 15.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,532 - GFF7195 0.37 -0.5 13,923 + GFF7195 0.75 -0.3 14,573 + GFF7196 0.47 +1.4 14,666 + GFF7196 0.58 +0.4 14,666 + GFF7196 0.58 +1.7 14,667 - GFF7196 0.58 +2.3 14,867 + GFF7196 0.82 +0.7 14,868 - GFF7196 0.82 -0.1 14,868 - GFF7196 0.82 +0.0 14,891 + GFF7196 0.85 -0.5 14,892 - GFF7196 0.85 +0.4 14,892 - GFF7196 0.85 +0.7 15,804 + +0.1 15,805 - +0.1 15,883 + -0.2 15,928 + +0.6
Or see this region's nucleotide sequence