Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7151 and GFF7152 are separated by 146 nucleotides GFF7152 and GFF7153 overlap by 4 nucleotides GFF7153 and GFF7154 are separated by 35 nucleotides GFF7154 and GFF7155 overlap by 4 nucleotides GFF7155 and GFF7156 are separated by 123 nucleotides
GFF7151 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 16,895 to 17,809
GFF7151
GFF7152 - no description, at 17,956 to 18,621
GFF7152
GFF7153 - no description, at 18,618 to 18,746
GFF7153
GFF7154 - Toxin HigB / Protein kinase domain of HipA, at 18,782 to 20,107
GFF7154
GFF7155 - hypothetical protein, at 20,104 to 20,565
GFF7155
GFF7156 - hypothetical protein, at 20,689 to 21,693
GFF7156
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.853 kb on + strand at 17.860 kb on - strand at 17.869 kb on - strand at 17.869 kb on - strand at 17.870 kb on + strand at 17.870 kb on + strand at 17.881 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 18.057 kb on + strand, within GFF7152 at 18.060 kb on - strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.783 kb on + strand at 18.783 kb on + strand at 18.783 kb on + strand at 18.784 kb on - strand at 18.784 kb on - strand at 18.784 kb on - strand at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.118 kb on + strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.657 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.926 kb on + strand, within GFF7154 at 19.927 kb on - strand, within GFF7154 at 19.927 kb on - strand, within GFF7154 at 20.025 kb on + strand at 20.026 kb on - strand at 20.026 kb on - strand at 20.026 kb on - strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.924 kb on + strand, within GFF7156 at 20.925 kb on - strand, within GFF7156 at 20.925 kb on - strand, within GFF7156 at 20.925 kb on - strand, within GFF7156
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,853 + -0.1 17,860 - -1.4 17,869 - +0.6 17,869 - -0.0 17,870 + +0.0 17,870 + -0.1 17,881 + +0.1 17,957 + -2.1 17,957 + +0.2 17,957 + +0.2 17,957 + -0.9 17,957 + -0.2 17,957 + -1.0 17,957 + +0.1 17,957 + -0.5 17,957 + -0.9 17,958 - +0.9 17,958 - -0.2 17,958 - -0.4 17,958 - +0.2 17,958 - -0.5 17,958 - -1.0 17,958 - +0.0 17,958 - -0.9 17,958 - -0.7 17,958 - -0.1 18,057 + GFF7152 0.15 -0.4 18,060 - GFF7152 0.16 -0.9 18,080 + GFF7152 0.19 -0.6 18,080 + GFF7152 0.19 +0.4 18,080 + GFF7152 0.19 -0.7 18,080 + GFF7152 0.19 +0.4 18,080 + GFF7152 0.19 -0.5 18,080 + GFF7152 0.19 -1.2 18,080 + GFF7152 0.19 +1.2 18,081 - GFF7152 0.19 +0.2 18,081 - GFF7152 0.19 -1.0 18,783 + +0.1 18,783 + +1.4 18,783 + +0.8 18,784 - -0.2 18,784 - -0.1 18,784 - -1.0 19,014 + GFF7154 0.17 -0.4 19,014 + GFF7154 0.17 -0.9 19,014 + GFF7154 0.17 -0.8 19,014 + GFF7154 0.17 -0.3 19,014 + GFF7154 0.17 +0.5 19,014 + GFF7154 0.17 -0.4 19,014 + GFF7154 0.17 -1.6 19,014 + GFF7154 0.17 -0.3 19,014 + GFF7154 0.17 -0.3 19,014 + GFF7154 0.17 -0.7 19,014 + GFF7154 0.17 -0.5 19,014 + GFF7154 0.17 -1.5 19,015 - GFF7154 0.18 +0.1 19,015 - GFF7154 0.18 -1.4 19,015 - GFF7154 0.18 -0.4 19,015 - GFF7154 0.18 -0.1 19,015 - GFF7154 0.18 +0.3 19,015 - GFF7154 0.18 +0.4 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 +0.3 19,015 - GFF7154 0.18 -0.4 19,015 - GFF7154 0.18 +0.4 19,015 - GFF7154 0.18 +0.0 19,015 - GFF7154 0.18 -0.5 19,015 - GFF7154 0.18 -0.6 19,015 - GFF7154 0.18 +0.8 19,015 - GFF7154 0.18 -0.4 19,015 - GFF7154 0.18 -0.4 19,015 - GFF7154 0.18 -0.4 19,092 + GFF7154 0.23 -1.4 19,092 + GFF7154 0.23 -0.3 19,093 - GFF7154 0.23 -0.7 19,093 - GFF7154 0.23 -0.2 19,093 - GFF7154 0.23 -0.4 19,116 + GFF7154 0.25 -0.1 19,116 + GFF7154 0.25 -0.4 19,116 + GFF7154 0.25 -0.0 19,116 + GFF7154 0.25 -0.8 19,116 + GFF7154 0.25 -0.9 19,116 + GFF7154 0.25 +0.6 19,117 - GFF7154 0.25 -0.8 19,117 - GFF7154 0.25 +2.3 19,117 - GFF7154 0.25 -0.6 19,117 - GFF7154 0.25 +0.1 19,117 - GFF7154 0.25 -0.2 19,117 - GFF7154 0.25 +0.8 19,117 - GFF7154 0.25 +0.1 19,117 - GFF7154 0.25 +0.8 19,117 - GFF7154 0.25 -0.5 19,117 - GFF7154 0.25 -0.6 19,118 + GFF7154 0.25 -0.4 19,119 - GFF7154 0.25 -0.1 19,119 - GFF7154 0.25 -0.5 19,134 + GFF7154 0.27 -1.0 19,134 + GFF7154 0.27 +0.3 19,134 + GFF7154 0.27 -0.2 19,134 + GFF7154 0.27 +0.2 19,134 + GFF7154 0.27 -0.3 19,134 + GFF7154 0.27 +0.3 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 +0.0 19,134 + GFF7154 0.27 -0.4 19,134 + GFF7154 0.27 -0.6 19,134 + GFF7154 0.27 -0.5 19,135 - GFF7154 0.27 +1.0 19,135 - GFF7154 0.27 -0.3 19,305 + GFF7154 0.39 -1.2 19,305 + GFF7154 0.39 -2.1 19,305 + GFF7154 0.39 -0.4 19,305 + GFF7154 0.39 -0.5 19,305 + GFF7154 0.39 -0.5 19,305 + GFF7154 0.39 -0.6 19,305 + GFF7154 0.39 -1.6 19,305 + GFF7154 0.39 -0.1 19,305 + GFF7154 0.39 +0.4 19,306 - GFF7154 0.40 -0.5 19,306 - GFF7154 0.40 -0.1 19,306 - GFF7154 0.40 -0.8 19,306 - GFF7154 0.40 -0.2 19,306 - GFF7154 0.40 -1.1 19,306 - GFF7154 0.40 +0.1 19,657 + GFF7154 0.66 -0.6 19,657 + GFF7154 0.66 +1.6 19,657 + GFF7154 0.66 -0.2 19,926 + GFF7154 0.86 +0.8 19,926 + GFF7154 0.86 -0.8 19,926 + GFF7154 0.86 +0.1 19,926 + GFF7154 0.86 +0.2 19,926 + GFF7154 0.86 -0.6 19,926 + GFF7154 0.86 +0.3 19,927 - GFF7154 0.86 +1.3 19,927 - GFF7154 0.86 -0.5 20,025 + -0.5 20,026 - +0.4 20,026 - -1.6 20,026 - -0.2 20,066 + -0.5 20,066 + -1.4 20,066 + +0.4 20,066 + +3.3 20,067 - -1.4 20,067 - +0.3 20,067 - -0.2 20,924 + GFF7156 0.23 +0.2 20,924 + GFF7156 0.23 -1.5 20,924 + GFF7156 0.23 -1.0 20,924 + GFF7156 0.23 -1.2 20,924 + GFF7156 0.23 +0.0 20,925 - GFF7156 0.23 +0.3 20,925 - GFF7156 0.23 -0.5 20,925 - GFF7156 0.23 -0.6
Or see this region's nucleotide sequence