Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7122 and GFF7123 are separated by 16 nucleotides GFF7123 and GFF7124 are separated by 724 nucleotides
GFF7122 - no description, at 40,088 to 40,999
GFF7122
GFF7123 - BUG/TctC family periplasmic protein, at 41,016 to 42,008
GFF7123
GFF7124 - Mobile element protein, at 42,733 to 43,452
GFF7124
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 40.022 kb on - strand at 40.046 kb on + strand at 40.046 kb on + strand at 40.046 kb on + strand at 40.046 kb on + strand at 40.046 kb on + strand at 40.047 kb on - strand at 40.047 kb on - strand at 40.047 kb on - strand at 40.047 kb on - strand at 40.195 kb on - strand, within GFF7122 at 40.277 kb on + strand, within GFF7122 at 40.340 kb on + strand, within GFF7122 at 40.361 kb on + strand, within GFF7122 at 40.362 kb on - strand, within GFF7122 at 40.362 kb on - strand, within GFF7122 at 40.362 kb on - strand, within GFF7122 at 40.362 kb on - strand, within GFF7122 at 40.388 kb on - strand, within GFF7122 at 40.517 kb on + strand, within GFF7122 at 40.517 kb on + strand, within GFF7122 at 40.517 kb on + strand, within GFF7122 at 40.517 kb on + strand, within GFF7122 at 40.517 kb on + strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.518 kb on - strand, within GFF7122 at 40.700 kb on + strand, within GFF7122 at 40.700 kb on + strand, within GFF7122 at 40.700 kb on + strand, within GFF7122 at 40.700 kb on + strand, within GFF7122 at 40.701 kb on - strand, within GFF7122 at 40.998 kb on - strand at 41.113 kb on - strand at 41.113 kb on - strand at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.141 kb on + strand, within GFF7123 at 41.142 kb on - strand, within GFF7123 at 41.142 kb on - strand, within GFF7123 at 41.142 kb on - strand, within GFF7123 at 41.142 kb on - strand, within GFF7123 at 41.145 kb on + strand, within GFF7123 at 41.145 kb on + strand, within GFF7123 at 41.145 kb on + strand, within GFF7123 at 41.145 kb on + strand, within GFF7123 at 41.145 kb on + strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.146 kb on - strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.184 kb on + strand, within GFF7123 at 41.185 kb on - strand, within GFF7123 at 41.185 kb on - strand, within GFF7123 at 41.185 kb on - strand, within GFF7123 at 41.185 kb on - strand, within GFF7123 at 41.261 kb on + strand, within GFF7123 at 41.262 kb on - strand, within GFF7123 at 41.295 kb on + strand, within GFF7123 at 41.349 kb on - strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.361 kb on + strand, within GFF7123 at 41.362 kb on - strand, within GFF7123 at 41.362 kb on - strand, within GFF7123 at 41.362 kb on - strand, within GFF7123 at 41.362 kb on - strand, within GFF7123 at 41.362 kb on - strand, within GFF7123 at 41.469 kb on + strand, within GFF7123 at 41.586 kb on + strand, within GFF7123 at 41.586 kb on + strand, within GFF7123 at 41.586 kb on + strand, within GFF7123 at 41.586 kb on + strand, within GFF7123 at 41.587 kb on - strand, within GFF7123 at 41.587 kb on - strand, within GFF7123 at 41.587 kb on - strand, within GFF7123 at 41.740 kb on + strand, within GFF7123 at 41.740 kb on + strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 42.013 kb on + strand at 42.013 kb on + strand at 42.013 kb on + strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.184 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.327 kb on + strand at 42.328 kb on - strand at 42.578 kb on + strand at 42.578 kb on + strand at 42.579 kb on - strand at 42.667 kb on - strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.699 kb on - strand at 42.704 kb on + strand at 42.704 kb on + strand at 42.704 kb on + strand at 42.705 kb on - strand at 42.705 kb on - strand at 42.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 40,022 - -2.1 40,046 + +0.4 40,046 + -0.2 40,046 + -0.7 40,046 + -0.1 40,046 + -0.1 40,047 - +0.2 40,047 - -0.9 40,047 - -1.4 40,047 - -0.0 40,195 - GFF7122 0.12 -0.3 40,277 + GFF7122 0.21 -1.0 40,340 + GFF7122 0.28 -0.6 40,361 + GFF7122 0.30 -1.3 40,362 - GFF7122 0.30 -1.4 40,362 - GFF7122 0.30 -0.6 40,362 - GFF7122 0.30 -1.0 40,362 - GFF7122 0.30 -0.1 40,388 - GFF7122 0.33 -0.4 40,517 + GFF7122 0.47 -0.8 40,517 + GFF7122 0.47 +0.1 40,517 + GFF7122 0.47 -1.4 40,517 + GFF7122 0.47 -0.7 40,517 + GFF7122 0.47 -0.6 40,518 - GFF7122 0.47 -1.2 40,518 - GFF7122 0.47 +0.9 40,518 - GFF7122 0.47 -1.3 40,518 - GFF7122 0.47 +0.9 40,518 - GFF7122 0.47 +0.2 40,518 - GFF7122 0.47 -0.5 40,518 - GFF7122 0.47 +0.1 40,700 + GFF7122 0.67 -0.3 40,700 + GFF7122 0.67 +0.3 40,700 + GFF7122 0.67 -0.7 40,700 + GFF7122 0.67 -0.8 40,701 - GFF7122 0.67 -0.3 40,998 - -1.2 41,113 - +0.1 41,113 - -0.9 41,141 + GFF7123 0.13 -0.8 41,141 + GFF7123 0.13 +0.0 41,141 + GFF7123 0.13 +0.8 41,141 + GFF7123 0.13 +0.4 41,141 + GFF7123 0.13 +0.3 41,141 + GFF7123 0.13 +0.1 41,141 + GFF7123 0.13 +0.3 41,142 - GFF7123 0.13 -0.7 41,142 - GFF7123 0.13 -1.1 41,142 - GFF7123 0.13 -0.4 41,142 - GFF7123 0.13 +0.1 41,145 + GFF7123 0.13 -1.4 41,145 + GFF7123 0.13 -0.4 41,145 + GFF7123 0.13 -0.1 41,145 + GFF7123 0.13 -0.1 41,145 + GFF7123 0.13 +0.5 41,146 - GFF7123 0.13 +0.3 41,146 - GFF7123 0.13 +0.8 41,146 - GFF7123 0.13 +0.9 41,146 - GFF7123 0.13 -0.0 41,146 - GFF7123 0.13 -0.1 41,146 - GFF7123 0.13 -0.1 41,184 + GFF7123 0.17 +1.2 41,184 + GFF7123 0.17 +0.6 41,184 + GFF7123 0.17 -0.5 41,184 + GFF7123 0.17 +0.3 41,184 + GFF7123 0.17 -0.1 41,184 + GFF7123 0.17 +0.1 41,185 - GFF7123 0.17 +0.1 41,185 - GFF7123 0.17 +0.1 41,185 - GFF7123 0.17 +0.5 41,185 - GFF7123 0.17 -0.2 41,261 + GFF7123 0.25 -1.0 41,262 - GFF7123 0.25 -1.0 41,295 + GFF7123 0.28 -0.4 41,349 - GFF7123 0.34 -0.7 41,361 + GFF7123 0.35 +0.6 41,361 + GFF7123 0.35 +0.1 41,361 + GFF7123 0.35 -0.3 41,361 + GFF7123 0.35 +0.4 41,361 + GFF7123 0.35 -0.3 41,361 + GFF7123 0.35 +0.9 41,362 - GFF7123 0.35 +0.3 41,362 - GFF7123 0.35 -1.0 41,362 - GFF7123 0.35 -1.0 41,362 - GFF7123 0.35 +0.5 41,362 - GFF7123 0.35 -0.2 41,469 + GFF7123 0.46 +0.6 41,586 + GFF7123 0.57 -0.2 41,586 + GFF7123 0.57 -0.1 41,586 + GFF7123 0.57 -0.1 41,586 + GFF7123 0.57 -0.1 41,587 - GFF7123 0.58 -0.8 41,587 - GFF7123 0.58 +1.0 41,587 - GFF7123 0.58 -0.7 41,740 + GFF7123 0.73 -0.5 41,740 + GFF7123 0.73 +0.0 41,741 - GFF7123 0.73 -0.2 41,741 - GFF7123 0.73 -0.0 41,741 - GFF7123 0.73 +0.3 41,741 - GFF7123 0.73 -0.1 42,013 + -1.4 42,013 + -0.4 42,013 + +0.7 42,014 - +0.6 42,014 - -0.8 42,014 - +0.2 42,014 - -0.0 42,184 + -1.2 42,321 + -0.4 42,321 + +0.8 42,321 + -0.2 42,321 + -0.0 42,321 + -0.3 42,321 + -0.2 42,322 - -0.5 42,322 - +0.6 42,322 - -0.2 42,322 - -1.2 42,322 - -1.5 42,327 + +0.1 42,328 - -0.8 42,578 + -0.3 42,578 + -0.3 42,579 - +0.1 42,667 - +0.9 42,698 + -1.1 42,698 + +0.6 42,698 + -1.5 42,698 + -0.7 42,698 + -0.5 42,699 - -0.5 42,704 + -0.5 42,704 + -0.2 42,704 + -0.4 42,705 - -0.2 42,705 - -0.5 42,705 - -0.3
Or see this region's nucleotide sequence